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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0028
         (518 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)               73   1e-13
SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   2e-09
SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26)                  41   5e-04
SB_39972| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.004
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.061
SB_55684| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_26502| Best HMM Match : Band_41 (HMM E-Value=1.4e-16)               29   3.0  
SB_15962| Best HMM Match : DUF528 (HMM E-Value=0.083)                  29   3.0  
SB_12391| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_23153| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_7638| Best HMM Match : TFIID_30kDa (HMM E-Value=3)                  29   3.0  
SB_8639| Best HMM Match : WD40 (HMM E-Value=1.9e-22)                   28   4.0  
SB_2610| Best HMM Match : F5_F8_type_C (HMM E-Value=4.5e-29)           28   4.0  
SB_15581| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-11)          28   4.0  
SB_9384| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.0  
SB_5621| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_36468| Best HMM Match : DUF1643 (HMM E-Value=4.1)                   27   7.0  
SB_46239| Best HMM Match : Phage_integrase (HMM E-Value=0.24)          27   7.0  
SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
          Length = 474

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 45/92 (48%), Positives = 57/92 (61%), Gaps = 6/92 (6%)
 Frame = +1

Query: 244 IGQECLEKVCEKLEIGAEADYFGLRVCPGSGPGRWLNLRNP----LDPHRIPGG--RLDL 405
           +GQE L+KVC++L+I  E +YFGL+ C       WLNLRNP    L PH +PG   RL L
Sbjct: 22  LGQEVLDKVCDELKI-KEKNYFGLKYCVND-TNVWLNLRNPVLTQLRPH-LPGKPYRLRL 78

Query: 406 RVKFWVPPHLLINEPTRHQFYLHAKLDLTEGR 501
            VKF+V P  L  E TR QFY   K  ++EG+
Sbjct: 79  EVKFFVAPKELQQEETRWQFYFCLKNQISEGK 110


>SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 32/68 (47%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
 Frame = +1

Query: 265 KVCEKLEIGAEADYFGLRVCPGSGPGRWLNLRNPLDPHRIP---GGRLDLRVKFWVPPHL 435
           +VC K ++ AE DYFGLR    +G  RW+NLRN L     P   G  L+LRVK++V    
Sbjct: 439 QVCRKHDLSAEVDYFGLRYVQ-AGDARWINLRNSLREQLSPGVLGSALELRVKYFVNYSQ 497

Query: 436 LINEPTRH 459
           L+ E TRH
Sbjct: 498 LLLEETRH 505


>SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26)
          Length = 906

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
 Frame = +1

Query: 220 EIKVDPNAIGQECLEKVCEKLEIGAEADYFGLRVCPGSGPGRWLNLRNPLDPHRIPGGR- 396
           ++ +   + G +CLE + EKL +  E  YFGL+     G   WL+L  P+       GR 
Sbjct: 597 DLILSDGSTGSDCLEIIAEKLGL-TETAYFGLQY-RKKGDDWWLDLAKPVAKQLSNHGRI 654

Query: 397 -----LDLRVKFWV-PPHLLINEPTRHQFYLHAKLDLTEGRLV 507
                L  RVK++V   + L  E  R+ +YL  K ++  G L+
Sbjct: 655 AAVVTLKFRVKYFVCNAYSLQEEIARYLYYLQLKKNVLAGLLL 697


>SB_39972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
 Frame = +1

Query: 220 EIKVDPNAIGQECLEKVCEKLEIGAEADYFGLR-VCPGSGPGRWLNLRNPLDPHRIPGG- 393
           E  +D    G    ++VC+ + + AE +YFGLR +    G   WL     +         
Sbjct: 21  ECPIDKTTKGDHLFDQVCDHIGL-AEKEYFGLRYIDEKDGQFNWLEGDRSIKRQMGKAPL 79

Query: 394 RLDLRVKFWVP-PHLLINEPTRHQFYLHAKLDLTEGRL 504
                VKF+   P  L  + TR+QF L  + DL +GR+
Sbjct: 80  HFYFAVKFYPENPTTLREDITRYQFVLQLREDLLKGRI 117


>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1107

 Score = 34.3 bits (75), Expect = 0.061
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +1

Query: 238 NAIGQECLEKVCEKLEIGAEADYFGLRVCPGSGPGRWLNL 357
           +A GQ   + VC+ L++  E DYFGLR    S    WL+L
Sbjct: 2   DAKGQTVFDTVCKALDL-VEKDYFGLRYVDDSKQRHWLDL 40


>SB_55684| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = +1

Query: 241 AIGQECLEKVCEKLEIGAEADYFGLRVCPGSGPGRWLNLRNPLDPHRIPGGRL 399
           ++G +   KVCE L+IG E   FGL  C GS  G+      PL      G R+
Sbjct: 16  SLGTQRSFKVCELLKIGEETSAFGLLFCQGS-MGKLTGKLTPLRVWNACGNRV 67


>SB_26502| Best HMM Match : Band_41 (HMM E-Value=1.4e-16)
          Length = 573

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 406 RVKFWVPPHLLINEP-TRHQFYLHAKLDLTEGRLVV 510
           RVK++V    L+ +  TRH +YL  + D+ EG + V
Sbjct: 298 RVKYYVENICLLQQQSTRHLYYLQLRKDVLEGGIFV 333


>SB_15962| Best HMM Match : DUF528 (HMM E-Value=0.083)
          Length = 1466

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 196  SQPNSVILEIKVDPNAIGQECLEKVCEKLEIGAEADYFGLRVCPGSGPG 342
            +QP SV  E    P+   +E  + +C+ L+IG + D       P S PG
Sbjct: 1101 AQPQSVESEHPETPSDAAKESSQALCDLLQIGRKQDSKEAAKPPDSTPG 1149


>SB_12391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +1

Query: 184 MWLVSQPNSVILEIKVDPNAIGQECLEKVCEKLEIGAEADYFGLRVCPGS 333
           +W+V +P S +  + V P ++G     KV    E+  + DY+ +R  PG+
Sbjct: 450 IWVVHRPRSGMWSLMV-PFSVGSHSF-KVTASSELNIDFDYYFIRRLPGN 497


>SB_23153| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 226 KVDPNAIGQECLEKVCEKLEIGAE 297
           K DP  IG E +EK+C+ L++  E
Sbjct: 20  KDDPETIGPEGIEKLCQDLDVDPE 43


>SB_7638| Best HMM Match : TFIID_30kDa (HMM E-Value=3)
          Length = 314

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 217 LEIKVDPNAIGQECLEKVCEKLEIGAEADYFGLRVCPGSGPGRWLNLRNPLD 372
           L +K DP      C E+ C++L I    D+   R       GRW ++  P D
Sbjct: 81  LYVKFDPRC----CTEEGCDELVIATSPDFQQNRYVLDGPQGRWFDIELPGD 128


>SB_8639| Best HMM Match : WD40 (HMM E-Value=1.9e-22)
          Length = 442

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = +1

Query: 361 NPLDPHRIPGGRLDLRVKFW-VPPHLL---INEP 450
           NP D H I  G  D RV  W +P H L   I+EP
Sbjct: 24  NPFDDHMIATGSEDARVMIWQIPEHGLHSNISEP 57


>SB_2610| Best HMM Match : F5_F8_type_C (HMM E-Value=4.5e-29)
          Length = 334

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -3

Query: 237 WVHLDFQDHRIRLTD*PHFGQHFERKYVKFNKSGRKI-FSLMNLTHVTIV 91
           W+      H  RL + P  GQH      K+NK G  +   L  +T +T V
Sbjct: 171 WIEPGHNPHHARLNNQPVGGQHIGAWAAKYNKKGEYLEVDLGQVTWITHV 220


>SB_15581| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-11)
          Length = 133

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -3

Query: 237 WVHLDFQDHRIRLTD*PHFGQHFERKYVKFNKSGRKI-FSLMNLTHVTIV 91
           W+      H  RL + P  GQH      K+NK G  +   L  +T +T V
Sbjct: 17  WIEPGHNPHHARLNNQPVGGQHIGAWAAKYNKKGEYLEVDLGQVTWITHV 66


>SB_9384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = +1

Query: 361 NPLDPHRIPGGRLDLRVKFW-VPPHLL---INEP 450
           NP D H I  G  D RV  W +P H L   I+EP
Sbjct: 88  NPFDDHMIATGSEDARVMIWQIPEHGLHSNISEP 121


>SB_5621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 242 AFGSTLISKITELG*LTNHILVNISNENT*NLI 144
           A GS L S    LG + NH+ + + ++ T NL+
Sbjct: 4   AIGSQLFSPFRALGYIANHVPLAVQSQGTENLV 36


>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 436 LINEPTRHQFYLHAKLDLTEGRL 504
           + N  T+HQFYL  + DL + RL
Sbjct: 417 ITNHKTKHQFYLQLRKDLLDCRL 439


>SB_36468| Best HMM Match : DUF1643 (HMM E-Value=4.1)
          Length = 471

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +2

Query: 221 KSRWTQMRLVKSALRRYARNWRSVPRQTIS-VCACAQDQAP 340
           KSRW    L +     + R WR  P  TI+ +    + Q P
Sbjct: 210 KSRWEDEELDRPGCFAWMREWRDAPTHTIAGIVEMYEQQVP 250


>SB_46239| Best HMM Match : Phage_integrase (HMM E-Value=0.24)
          Length = 364

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = +2

Query: 245 LVKSALRRYARNWRSVPRQTISVCACAQ---DQAPEDGLTCGTPSIRTAYPEDG 397
           LV  +L  +ARNW S    T+++C  A    D      +      +R  Y E G
Sbjct: 41  LVSGSLSTFARNWESSNPLTLTLCLFASFLADFVQPSSIKVYLSGVRAMYIEQG 94


>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3296

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +2

Query: 239  MRLVKSALRRYARNWRSVPRQTISVCACAQDQAPEDGLTCGTPSIRTAYPEDG*TSA 409
            +++  S L+ +A   RSV RQ + +   A     EDG T  T   +    E+G T A
Sbjct: 1567 LQVFHSLLKAHAVEARSVVRQALEILTPAMPARMEDGNTMLTHWTKKIIVEEGHTVA 1623


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,647,942
Number of Sequences: 59808
Number of extensions: 370273
Number of successful extensions: 861
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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