Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0026
(455 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6876| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 29 1.8
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_23611| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21) 28 3.2
SB_37031| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_18782| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_5651| Best HMM Match : Hexapep (HMM E-Value=0.00035) 27 5.6
SB_48762| Best HMM Match : Hexapep (HMM E-Value=0.3) 27 7.4
SB_41377| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_38050| Best HMM Match : Hexapep (HMM E-Value=0.04) 27 7.4
SB_50117| Best HMM Match : EB1 (HMM E-Value=3.6) 27 7.4
SB_46489| Best HMM Match : Lig_chan (HMM E-Value=0.072) 27 7.4
SB_816| Best HMM Match : PDT (HMM E-Value=0.96) 27 7.4
SB_34483| Best HMM Match : Hexapep (HMM E-Value=0.0027) 27 9.7
SB_35680| Best HMM Match : Sushi (HMM E-Value=4.4e-22) 27 9.7
SB_25374| Best HMM Match : DUF1087 (HMM E-Value=3.2) 27 9.7
SB_23964| Best HMM Match : Hexapep (HMM E-Value=1.2e-05) 27 9.7
SB_19293| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_8425| Best HMM Match : EGF (HMM E-Value=0) 27 9.7
SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074) 27 9.7
>SB_6876| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 29.1 bits (62), Expect = 1.8
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +1
Query: 253 LIMDSDEL---GNDLVRLD-NGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRF 420
+I+D+D + G+D V D + F+V DD V D+V +D +N G N + + D
Sbjct: 270 VIVDNDTVVIVGDDNVADDYDNFIVGDDDNVDGDDNVADDYDNFIVGDDDNVIVGDDDNV 329
Query: 421 L 423
+
Sbjct: 330 I 330
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +1
Query: 265 SDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQ 411
++EL ND+V ++ + A+D + + EN D+ K NA L++Q
Sbjct: 892 ANELENDIVAANSDKVQAEDDLYAMQGKIGKLENQIDTLRKQNAQLKDQ 940
>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2468
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 262 DSDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGS 384
D DE G L+ + ++ DD F V DD + + D GS
Sbjct: 468 DDDEDGGSLMEEETADMMQDDAFAVYEDDNVFLQIRDDGGS 508
>SB_23611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 265 SDELGNDLVRLDNGFLVA-DDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFL 423
SDE G D+ R D+ DD +D +DE + D GS + R + F+
Sbjct: 10 SDEEGEDITREDDDDEEEEDDDEDFEDEDDYDDEYDEDEGSSARRKRRRESGFI 63
>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
Length = 1728
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 337 NSDDVLEDENNSDSGSKSNAPLREQDRFLPIANIAKI 447
NSDD+L DEN S S S+A E ++ + N+ K+
Sbjct: 1169 NSDDLLGDENMSSSSLPSDAEFNEFHPWI-VDNVRKL 1204
>SB_37031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 268 DELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSD 375
D++G D+ DN F+V DD + DD +D++N D
Sbjct: 39 DDVG-DIADDDNAFVVLDDDDDDDDDDDDDDDDNDD 73
>SB_18782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +1
Query: 256 IMDSDELGNDLVRLDNGFLVADDTFVVNSDDVLED 360
++D D+L +D+ +D L+ DD VV+SD +L+D
Sbjct: 83 VVDGDKLLDDIDVVDGDTLL-DDADVVDSDTLLDD 116
>SB_5651| Best HMM Match : Hexapep (HMM E-Value=0.00035)
Length = 873
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +1
Query: 256 IMDSDELGNDLVRLDNGFLVADDTFVVNSDDVLED 360
++D D+L +D+ +D L+ DD VV+SD +L+D
Sbjct: 463 VVDGDKLLDDIDVVDGDTLL-DDVDVVDSDTLLDD 496
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 256 IMDSDELGNDLVRLDNGFLVADDTFVVNSDDVLED 360
++D D L +D+ +D G + DD VV+SD +L+D
Sbjct: 127 VVDGDPLLDDVGVVD-GVTLLDDVDVVDSDTLLDD 160
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 256 IMDSDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGS 384
++D D+L +D+ +D L+ DD VV+ D +L+D + D S
Sbjct: 187 VVDGDKLLDDIDVVDGDTLL-DDADVVDGDKLLDDVDVVDGDS 228
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 256 IMDSDELGNDLVRLDNGFLVADDTFVVNSDDVLED 360
++D D+L +D+ +D L+ DD VV+ D +LED
Sbjct: 211 VVDGDKLLDDVDVVDGDSLL-DDVDVVDEDTLLED 244
>SB_48762| Best HMM Match : Hexapep (HMM E-Value=0.3)
Length = 592
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 256 IMDSDELGNDLVRLDNGFLVADDTFVVNSDDVLED 360
++D D L +D V + NG + DD VV+ D +L+D
Sbjct: 317 VVDGDPLLDD-VDVVNGVTLLDDVDVVDGDPLLDD 350
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 256 IMDSDELGNDLVRLDNGFLVADDTFVVNSDDVLED 360
++D L +D+ +D+G + DD VV+ D +L+D
Sbjct: 365 VVDGVTLLDDVDVVDDGITLLDDVDVVDGDPLLDD 399
>SB_41377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 331
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 200 AGFTAQRNVVFTKLCIQG*KK*LSSLNHCVQIIK 99
+G+ QRNV + K C +G K N +I+K
Sbjct: 117 SGYFVQRNVDYVKKCFKGDKSDTEETNSLPRIVK 150
>SB_38050| Best HMM Match : Hexapep (HMM E-Value=0.04)
Length = 324
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 256 IMDSDELGNDLVRLDNGFLVADDTFVVNSDDVLED 360
++DSD L +D+ +D G + DD VV+ D +L+D
Sbjct: 216 VVDSDPLLDDVDVVD-GVTLLDDVDVVDGDTLLDD 249
>SB_50117| Best HMM Match : EB1 (HMM E-Value=3.6)
Length = 362
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 235 R*ILKFLIMDSDELGNDLVRLD-NGFLVADDTFVVNSDDVLEDENNSD 375
R +++F+++ S +++ R D + +V DD N +DV +DEN+ D
Sbjct: 313 RVVVEFVVVGSTISNDNISRDDVDDDIVVDDHDYNNGNDVDDDENDDD 360
>SB_46489| Best HMM Match : Lig_chan (HMM E-Value=0.072)
Length = 327
Score = 27.1 bits (57), Expect = 7.4
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +1
Query: 253 LIMDSDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFLPI 429
LIM + EL ++ F VA +TF + +L DE GS+S+ L E F I
Sbjct: 247 LIMSAAELCTEVKACVEEF-VARETFYFETLKILSDETIPKRGSRSSRTLFEDWEFFVI 304
>SB_816| Best HMM Match : PDT (HMM E-Value=0.96)
Length = 265
Score = 27.1 bits (57), Expect = 7.4
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +1
Query: 253 LIMDSDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFLPI 429
LIM + EL ++ F VA +TF + +L DE GS+S+ L E F I
Sbjct: 174 LIMSAAELCTEVKACVEEF-VARETFYFETLKILSDETIPKRGSRSSRTLFEDWEFFVI 231
>SB_34483| Best HMM Match : Hexapep (HMM E-Value=0.0027)
Length = 323
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 256 IMDSDELGNDLVRLDNGFLVADDTFVVNSDDVLED 360
++DSD L +D+ +D L+ DD VV+ D +L+D
Sbjct: 215 VVDSDPLLDDVDVVDGATLL-DDVDVVDGDTLLDD 248
>SB_35680| Best HMM Match : Sushi (HMM E-Value=4.4e-22)
Length = 442
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 319 DDTFVVNSDDVLEDENNSDSGSKSN 393
DD + N DD +D+N+ D K N
Sbjct: 332 DDDYNYNDDDYGDDDNDDDDDEKDN 356
>SB_25374| Best HMM Match : DUF1087 (HMM E-Value=3.2)
Length = 144
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 262 DSDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNA 396
DSD +D DN ++ +NSD + D +NSD+ + N+
Sbjct: 4 DSDNSDSDTSNSDNSNSDNLNSDNLNSDKLKSDNSNSDNSNSDNS 48
>SB_23964| Best HMM Match : Hexapep (HMM E-Value=1.2e-05)
Length = 1482
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 256 IMDSDELGNDLVRLDNGFLVADDTFVVNSDDVLED 360
++D D L +D+ +D G + DD VV+ D +LED
Sbjct: 890 VVDGDTLLDDVDVVD-GVTMLDDVDVVDGDKLLED 923
>SB_19293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 265 SDELGNDLVRLDNGFLVADDT 327
SDELG L+ D GFL+ + T
Sbjct: 465 SDELGEQLIMGDQGFLMGNQT 485
>SB_8425| Best HMM Match : EGF (HMM E-Value=0)
Length = 1955
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 319 DDTFVVNSDDVLEDENNSDSGSKSN 393
DD + N DD +D+N+ D K N
Sbjct: 1845 DDDYNYNDDDYGDDDNDDDDDEKDN 1869
>SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074)
Length = 1087
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 268 DELGNDLVRLDN-GFLVADDTFVVNSDDVLEDENNSD 375
D G D DN G +VADD V+ S D D +N+D
Sbjct: 726 DYYGIDDEEEDNSGGVVADDHMVIGSSDNYYDADNND 762
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,960,302
Number of Sequences: 59808
Number of extensions: 240342
Number of successful extensions: 822
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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