Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0024
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57728| Best HMM Match : Usp (HMM E-Value=3.9e-20) 30 2.1
SB_38330| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 29 4.8
SB_47141| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_24161| Best HMM Match : zf-P11 (HMM E-Value=8) 28 6.3
SB_3665| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_22592| Best HMM Match : CXC (HMM E-Value=3.7) 28 6.3
SB_19888| Best HMM Match : CagY_M (HMM E-Value=3.7) 28 6.3
SB_15164| Best HMM Match : Sas10_Utp3 (HMM E-Value=5.3) 28 8.4
SB_10385| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_36952| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_57728| Best HMM Match : Usp (HMM E-Value=3.9e-20)
Length = 744
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 529 SDTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRTTDSHQELCDLLD 669
+D DV + + + + D+DYD S +G++ D L D LD
Sbjct: 201 NDDDVILMKAESHDDDDDYDRSFVSFCMTDGSDE-VDDDDRLTDSLD 246
>SB_38330| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/56 (23%), Positives = 29/56 (51%)
Frame = +1
Query: 484 AGLKLSIESKRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRTTDSHQE 651
A L +E KRK+ + +++KR ++EE +E+ + ++ + E + +E
Sbjct: 103 ADLATRVE-KRKLYYCNLTITIKRRRREEEEEEVEEEEEEEEEEEEEEEEEEEEEE 157
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/64 (25%), Positives = 34/64 (53%)
Frame = +1
Query: 508 SKRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRTTDSHQELCDLLDSMYTGK 687
S+ +M+GS+ +V + + +E ++ HT+ A E N + D+ +EL + + ++ K
Sbjct: 1929 SRSQMTGSEGEVLTENDRLKEENKTLKEEHTELA--EQNEKLKDALEELREAVQHLWDEK 1986
Query: 688 LTPE 699
E
Sbjct: 1987 KEKE 1990
>SB_47141| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -3
Query: 269 SAVSMFIIAALRFTLTLKLYVPLSPSDPKATGDGDVSSHLIVGIVELMLV 120
S +S+ +AL + ++L+V S D TGD ++ HL V + L ++
Sbjct: 44 SHISVHHFSALFNRIAIRLHVLASSEDNSDTGDLELIQHLNVNVSSLQIL 93
>SB_24161| Best HMM Match : zf-P11 (HMM E-Value=8)
Length = 229
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -3
Query: 269 SAVSMFIIAALRFTLTLKLYVPLSPSDPKATGDGDVSSHLIVGIVELMLV 120
S +S+ +AL + ++L+V S D TGD ++ HL V + L ++
Sbjct: 95 SHISVHHFSALFNRIAIRLHVLASSEDNSDTGDLELIQHLNVNVSSLQIL 144
>SB_3665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 488 PALISSEHVFCMLGGVLEDGDVADEPLDIEELESFPLP 375
PAL +E++ L G L DG D P D + L+ +P P
Sbjct: 158 PALPYNENITVNLNGQLRDGGKPDSPSD-DLLDPYPSP 194
>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1081
Score = 28.3 bits (60), Expect = 6.3
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 16/91 (17%)
Frame = +1
Query: 475 LIKAGLKLSIES--KRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQA--------KNEGN 624
+I+AG+KLS+E+ +R + + +++ EE DE S Q+A E +
Sbjct: 293 VIQAGMKLSLEAALRRVKELEEENAKIRKQSAEEKDELEKSVKRQEAATMFGLRRNEEMS 352
Query: 625 NRTTDSHQELCDL------LDSMYTGKLTPE 699
N+ +E+ D+ +MY GK++PE
Sbjct: 353 NKIYRMQKEIEDIDRKYMREINMYKGKISPE 383
>SB_22592| Best HMM Match : CXC (HMM E-Value=3.7)
Length = 499
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 457 QKTCSELIKAGLKLSIESKRKMSGSDTD 540
+K+CS+ +K S ESK SG DTD
Sbjct: 351 KKSCSKCLKEFATSSFESKTDFSGYDTD 378
>SB_19888| Best HMM Match : CagY_M (HMM E-Value=3.7)
Length = 389
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 457 QKTCSELIKAGLKLSIESKRKMSGSDTD 540
+K+CS+ +K S ESK SG DTD
Sbjct: 154 KKSCSKCLKEFATSSFESKTDFSGYDTD 181
>SB_15164| Best HMM Match : Sas10_Utp3 (HMM E-Value=5.3)
Length = 478
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 523 SGSDTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRTTDSHQE 651
SGS++D + ++S +D S+ ++GN+ + DS +E
Sbjct: 3 SGSESDSDGNDDESDDSTKDKGDSNQSMESDDGNDDSADSEEE 45
>SB_10385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 495
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = -3
Query: 311 SFTISG-VRSVVFVPSAVSMFIIAALRFTLTLKLYVPLSPSDPKATGDGDVSSHLIVGIV 135
++ +SG V + + P+ + F IAA L+ Y PK TG S+ VG +
Sbjct: 46 TYVVSGQVAASIAGPAVIISFAIAAFASILSGLCYAEFGARVPKTTGSAYAYSYYTVGEI 105
Query: 134 ELMLVAFIISL 102
+ + + L
Sbjct: 106 WAFFIGWNLIL 116
>SB_36952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 62
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 523 SGSDTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRTTDSHQE 651
SGS++D + ++S +D S+ ++GN+ + DS +E
Sbjct: 3 SGSESDSDGNDDESDDSTKDKGDSNQSMESDDGNDDSADSEEE 45
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +3
Query: 240 CCYDKHADRRGNKYYASYAGDCKRCHHHDKPPGPV*LRKEFQ 365
CC H +R YY ++ R H +PP + L+ E +
Sbjct: 44 CCIHTHTERDSASYYTAFTLALNRI-HQARPPTKIFLQNELK 84
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.309 0.125 0.340
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,500,151
Number of Sequences: 59808
Number of extensions: 394956
Number of successful extensions: 1131
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
- SilkBase 1999-2023 -