Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0023
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53067| Best HMM Match : No HMM Matches (HMM E-Value=.)              99   4e-21
SB_16276| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   7e-17
SB_39520| Best HMM Match : Abhydrolase_1 (HMM E-Value=2)               84   9e-17
SB_26325| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   2e-16
SB_14579| Best HMM Match : No HMM Matches (HMM E-Value=.)              82   4e-16
SB_21051| Best HMM Match : Abhydro_lipase (HMM E-Value=1.8e-33)        48   7e-06
SB_53126| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   5e-04
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   5e-04
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     31   0.90 
SB_41624| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_39210| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_46611| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_44366| Best HMM Match : Rep_2 (HMM E-Value=3.1)                     28   8.4  
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)             28   8.4  
SB_17219| Best HMM Match : Put_Phosphatase (HMM E-Value=5.7)           28   8.4  

>SB_53067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 50/138 (36%), Positives = 82/138 (59%), Gaps = 1/138 (0%)
 Frame = +2

Query: 44  IFFICGTDEKQFNKTLLPVFLSHLGTGTSMKTILHFAQEIDAAGRFQQFDYGPT-NNMII 220
           +F I G D  Q N+T LP+++SH   GTS+K ++HFAQ I    +FQ +DYG    N   
Sbjct: 525 LFLIAGMDRSQLNETRLPIYISHTPAGTSVKNVVHFAQ-IFREKKFQMYDYGSAEKNKHK 583

Query: 221 YNSETPPEYDLRKITLPIYLLYSRNDLLSSEQDVDKLYQDLETRTEIYLVPDPEFNHVDY 400
           YN +TPP+Y++  + +P  L +  +D+L+   DV+ L   L    ++Y    P ++H+D+
Sbjct: 584 YNQDTPPQYNVSAVKVPSALYWGGHDVLADPTDVEDLLAKLP--HQMYNKYLPTWDHLDF 641

Query: 401 LMANDAPRLLNDKVLQFL 454
           + A DA  L+ D V++ +
Sbjct: 642 IWALDAASLVYDDVIRHI 659


>SB_16276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 44/124 (35%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
 Frame = +2

Query: 86  TLLPVFLSHLGTGTSMKTILHFAQEIDAAGRFQQFDYGPT-NNMIIYNSETPPEYDLRKI 262
           T LP+++SH   GTS+K ++HFAQ I    +FQ +DYG    N   YN +TPP+Y++  +
Sbjct: 1   TRLPIYISHTPAGTSVKNVVHFAQ-IFREKKFQMYDYGSAEKNKHKYNQDTPPQYNVSAV 59

Query: 263 TLPIYLLYSRNDLLSSEQDVDKLYQDLETRTEIYLVPDPEFNHVDYLMANDAPRLLNDKV 442
            +P  L +  +D+L+   DV+ L   L    ++Y    P ++H+D++ A DA  L+ D V
Sbjct: 60  KVPSALYWGGHDVLADPTDVEDLLAKLP--HQMYNKYLPTWDHLDFIWALDAASLVYDDV 117

Query: 443 LQFL 454
           ++ +
Sbjct: 118 IRHI 121


>SB_39520| Best HMM Match : Abhydrolase_1 (HMM E-Value=2)
          Length = 265

 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 47/137 (34%), Positives = 71/137 (51%)
 Frame = +2

Query: 53  ICGTDEKQFNKTLLPVFLSHLGTGTSMKTILHFAQEIDAAGRFQQFDYGPTNNMIIYNSE 232
           + G D    N+T +PV++SH   GTS K I+HF+Q +    R Q+FDYG   NM  YN  
Sbjct: 131 VVGFDSPNINETRVPVYVSHFFEGTSFKDIVHFSQMM-YQNRCQKFDYGEAGNMKRYNKT 189

Query: 233 TPPEYDLRKITLPIYLLYSRNDLLSSEQDVDKLYQDLETRTEIYLVPDPEFNHVDYLMAN 412
           TPP   ++ +  P  L Y   D L    D   L   ++    ++     E+NH+D+L   
Sbjct: 190 TPPLCHVQDMPTPTVLFYGEKDGLGDPVDAQALKSLVQNL--VHSEEMKEWNHLDFLYGV 247

Query: 413 DAPRLLNDKVLQFLLAA 463
           DA +LL  +++  L A+
Sbjct: 248 DAFKLLYPRIVDLLKAS 264


>SB_26325| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 44/124 (35%), Positives = 73/124 (58%), Gaps = 1/124 (0%)
 Frame = +2

Query: 86  TLLPVFLSHLGTGTSMKTILHFAQEIDAAGRFQQFDYGPT-NNMIIYNSETPPEYDLRKI 262
           T LP+++SH   GTS+K ++HFAQ I    +FQ +DYG    N   YN +TPP+Y++  +
Sbjct: 1   TRLPIYISHTPAGTSVKNVVHFAQ-IFREKKFQMYDYGSAEKNKHKYNQDTPPQYNVSAV 59

Query: 263 TLPIYLLYSRNDLLSSEQDVDKLYQDLETRTEIYLVPDPEFNHVDYLMANDAPRLLNDKV 442
            +P  L +  +D+L+   DV  L   L    ++Y    P ++H+D++ A DA  L+ D V
Sbjct: 60  KVPSALYWGGHDVLADPTDVKDLLAKLP--HQMYNKYLPTWDHLDFIWALDAASLVYDDV 117

Query: 443 LQFL 454
           ++ +
Sbjct: 118 IRHI 121


>SB_14579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 42/120 (35%), Positives = 69/120 (57%)
 Frame = +2

Query: 86  TLLPVFLSHLGTGTSMKTILHFAQEIDAAGRFQQFDYGPTNNMIIYNSETPPEYDLRKIT 265
           T LPV++SH   GTS+K ++H+AQ   +  +F+ +DYG  +N+  Y   TPP+Y++  IT
Sbjct: 1   TRLPVYISHTPAGTSVKNMIHYAQMYKSK-KFEMYDYGK-DNIKRYGQNTPPQYNISAIT 58

Query: 266 LPIYLLYSRNDLLSSEQDVDKLYQDLETRTEIYLVPDPEFNHVDYLMANDAPRLLNDKVL 445
           +P  L +  ND L+   DV  L + L  +T I       + H+D++   DA  L+ D ++
Sbjct: 59  VPTMLYWGGNDWLADPDDVSLLMKALPPKTLIDNKELKAWQHLDFIWGLDAAELVYDDIV 118


>SB_21051| Best HMM Match : Abhydro_lipase (HMM E-Value=1.8e-33)
          Length = 991

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 21/55 (38%), Positives = 34/55 (61%)
 Frame = +2

Query: 59  GTDEKQFNKTLLPVFLSHLGTGTSMKTILHFAQEIDAAGRFQQFDYGPTNNMIIY 223
           G D    N + +PV +SH G+GTS K ++HF Q +  +G+ Q+++YG   N + Y
Sbjct: 340 GFDSSNLNMSRVPVIMSHWGSGTSFKNMVHFGQMV-TSGKCQKYNYGYFYNWMKY 393


>SB_53126| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 22/83 (26%), Positives = 39/83 (46%)
 Frame = +2

Query: 236 PPEYDLRKITLPIYLLYSRNDLLSSEQDVDKLYQDLETRTEIYLVPDPEFNHVDYLMAND 415
           PP Y ++ + +P  L    +D L+   DV +L   ++       +P   +NH D+L   D
Sbjct: 3   PPHYRVKDMDVPTVLFSGSHDTLADPLDVGELKPRIQNLVHSEEIPG--WNHADFLFGMD 60

Query: 416 APRLLNDKVLQFLLAAFADHQGP 484
           A RLL  K+++ +     +   P
Sbjct: 61  AERLLYRKIVKMMFKRIREDNVP 83


>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 38.3 bits (85), Expect(2) = 5e-04
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +2

Query: 53  ICGTDEKQFNKTLLPVFLSHLGTGTSMKTILHFAQ 157
           I G D+   N + +PVF +H  +GTS K I+HF Q
Sbjct: 222 IFGFDDGNANMSRVPVFFTHFPSGTSFKNIIHFGQ 256



 Score = 22.6 bits (46), Expect(2) = 5e-04
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 149 FAQEIDAAGRFQQFDYGPTNNMIIYNSE 232
           F   I   GR  +FDYG   NM  Y  +
Sbjct: 297 FFSSIVYYGRTARFDYGKRRNMKRYGKK 324


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = +2

Query: 296 DLLSSEQDVDKLYQDLETRTEIYLVPDPEFNHVDYLMANDAP----RLLNDKVLQFLLAA 463
           D +  ++  D+L ++LE  TEIY    P+FN  DYL     P      LN+  ++ LL  
Sbjct: 213 DSIIGQKHADRLREELELVTEIY----PDFNREDYLNGTLQPVFFGSALNNFGVRELLDC 268

Query: 464 FAD 472
           F D
Sbjct: 269 FID 271


>SB_41624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -3

Query: 126 VPVPRCDRNTGSSVLLNCFSSVPQMKNIAFYKRT 25
           +PVP   ++ G S+++NC  S P  + +A +++T
Sbjct: 227 IPVPLVKKSAGESLIINCSLSYPN-EEVALFQKT 259


>SB_39210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -2

Query: 508 LASSH--VTIRSLVVRKSCEQELQHLVVQESRSVVRHQVIHVVELRVRYEVDFCSGFQIL 335
           L SSH     R L+      QE+  +V+Q   + V    IHV E +   E  F +G++  
Sbjct: 280 LYSSHEEADTRILLHAAHASQEMTRVVIQSPDTDVTILAIHVFERKGCREFGFKTGYKDR 339

Query: 334 VQFINI 317
           V+FI I
Sbjct: 340 VRFIPI 345


>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 273 FTCC-TQGMIYCLANKMLINCTKIWKPEQKSTSY 371
           +TC  T G   C  N   +NCT+  KP+ +ST +
Sbjct: 587 YTCNGTTGARICFPNWYGVNCTRFCKPDNESTFF 620


>SB_46611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 354

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -2

Query: 505 ASSHVTIRSLVVRKSCEQELQHLVVQESRSVV 410
           A SHV+ RS V RKS ++  + ++ +E+R ++
Sbjct: 191 ALSHVSSRSGVTRKSTQKNKKEIMTEETRVIL 222


>SB_44366| Best HMM Match : Rep_2 (HMM E-Value=3.1)
          Length = 299

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +2

Query: 251 LRKITLPIYL-LYSRNDLLSSEQDVDKLYQDLETRTEIYLVPDPEFNHVDYLMANDAPRL 427
           L K +  I+   Y+R   L + QD+DK++ ++ T+ + Y+V +     VD++  N     
Sbjct: 166 LEKFSFDIFWEFYNR---LCNRQDIDKIFTEIGTKKKPYMVTE---QLVDFINNNQRDPR 219

Query: 428 LND 436
           LN+
Sbjct: 220 LNE 222


>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
          Length = 761

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 197 RSRTAGSVPRRRSPARSEGWSSWTCRSR 114
           +SR+   + R RSPARS  WS    RSR
Sbjct: 413 KSRSRSRI-RSRSPARSRSWSHTRSRSR 439


>SB_17219| Best HMM Match : Put_Phosphatase (HMM E-Value=5.7)
          Length = 500

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = +2

Query: 110 HLGTGTS-MKTILHFAQEIDAAGRFQQFDYGPTNNMIIYNSETPPEYDLRKITLPIYLLY 286
           ++ TG   + T+L  A  +D   RF+    G    M     + PP++D     +P  L  
Sbjct: 53  NISTGVPRVGTLLEAAWNLDEKCRFKVQTSGTQEIMPPVEEQLPPDHD-----MPAMLGL 107

Query: 287 SRNDLLSSEQDVDKLYQDLETRTEIYL 367
            R   + SE  +D+  ++ E +  I++
Sbjct: 108 KRKKDVMSESAIDRSVEEWELKNVIFV 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,096,481
Number of Sequences: 59808
Number of extensions: 503628
Number of successful extensions: 1573
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1567
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)