Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0021
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44891| Best HMM Match : No HMM Matches (HMM E-Value=.)             113   1e-25
SB_28877| Best HMM Match : Oxidored_q6 (HMM E-Value=5.3e-05)           73   3e-13
SB_42688| Best HMM Match : PB1 (HMM E-Value=0.12)                      34   0.13 
SB_30308| Best HMM Match : B56 (HMM E-Value=9e-08)                     29   3.6  

>SB_44891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 743

 Score =  113 bits (273), Expect = 1e-25
 Identities = 48/61 (78%), Positives = 56/61 (91%)
 Frame = +2

Query: 326 KGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALR 505
           + SLWP+ FGLACC +EMMH AAPRYDMDR+GVVFRASPRQ DVM+V+GT+TNKMAPALR
Sbjct: 567 ESSLWPLMFGLACCGIEMMHFAAPRYDMDRFGVVFRASPRQIDVMLVSGTVTNKMAPALR 626

Query: 506 K 508
           +
Sbjct: 627 R 627



 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 33/53 (62%), Positives = 38/53 (71%)
 Frame = +2

Query: 542 ISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQLQKK 700
           +S+ SCAN              CDRI+PVDIYVPGCPP+AEALL+GVLQLQKK
Sbjct: 677 LSISSCANSGGYYYHSYSVVRGCDRIIPVDIYVPGCPPSAEALLFGVLQLQKK 729


>SB_28877| Best HMM Match : Oxidored_q6 (HMM E-Value=5.3e-05)
          Length = 63

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 32/48 (66%), Positives = 34/48 (70%)
 Frame = +2

Query: 557 CANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQLQKK 700
           CAN              CDR++PVDIYVPGCPPTAEALLYGVLQLQKK
Sbjct: 2   CANGGGYYHYSYSVVRGCDRVIPVDIYVPGCPPTAEALLYGVLQLQKK 49


>SB_42688| Best HMM Match : PB1 (HMM E-Value=0.12)
          Length = 1338

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 17/72 (23%), Positives = 36/72 (50%)
 Frame = -1

Query: 503 SKLEPFCLLKFLLQSLHQTDGEMLGILRHIGPYHSEVQQYASSLQRSKLDQRSWAKGNLS 324
           ++L  F  L+F    +    GEM+ +LR   PY   +++    +++ K +Q+  AK   +
Sbjct: 641 NELHAFLKLRFHAPGIGLKQGEMVPLLRQ-SPYRDTIKEVKKRVKQEKKEQKKAAKQQAN 699

Query: 323 SPNSISHQVEPQ 288
           +  ++    EP+
Sbjct: 700 TMRNLERTKEPR 711


>SB_30308| Best HMM Match : B56 (HMM E-Value=9e-08)
          Length = 142

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/33 (42%), Positives = 24/33 (72%)
 Frame = -1

Query: 515 RTLSSKLEPFCLLKFLLQSLHQTDGEMLGILRH 417
           RTLS++L  +C+++FL +    TD  +LG+LR+
Sbjct: 62  RTLSAQLA-YCIVQFLEKDAALTDEVILGLLRY 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,921,115
Number of Sequences: 59808
Number of extensions: 480078
Number of successful extensions: 1065
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)