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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0020
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        232   2e-61
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.055
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        34   0.13 
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)             29   2.7  
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)              29   3.6  
SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)                      29   4.8  
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  29   4.8  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)               28   6.3  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         28   6.3  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   6.3  
SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)                 28   8.3  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  232 bits (567), Expect = 2e-61
 Identities = 108/151 (71%), Positives = 128/151 (84%)
 Frame = +3

Query: 117 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKL 296
           Q LDEYPK F+VG DNVGS+QMQ IR SLRG   VLMGKNTM+RKAI+ HL+NNP LEKL
Sbjct: 1   QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKL 60

Query: 297 LPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFF 476
           LPHIKGN+GFVFT+ DL +VR  ++ENKV APA+ G IAP+ V +PA NTGLGPEKTSFF
Sbjct: 61  LPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFF 120

Query: 477 QALSIPTKISKGTIEIINDVHILKPGDKVGA 569
           QAL+IPTKI++GTIEIINDVH++K  +K+ A
Sbjct: 121 QALAIPTKIARGTIEIINDVHLIKKDEKLKA 151


>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = +3

Query: 231 KNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 347
           K T++RK +K HLDN P L K LP + G +  + + GDL
Sbjct: 168 KVTIVRKELKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = -2

Query: 533 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 411
           I+D  NS   +  R  K+LEERGLL+  +GV GG +  ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +3

Query: 372  ENKVQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 545
            E ++ +PA     +P S+        TGL P   S  Q LS+ T +   ++    D+   
Sbjct: 2069 EPRIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNS 2128

Query: 546  KPGDK 560
             PG K
Sbjct: 2129 TPGKK 2133


>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
          Length = 812

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
 Frame = +1

Query: 148 SWVPITWARNRCSRSVSRYVAPVSCSWEKTQ*C-AKPSKTTWTTIQPSRNCCHTSRATLA 324
           S VP+T  + +  +       P + + + T     KP    +      + CC+  +A  A
Sbjct: 580 SSVPLTQFQAQLQQQQPAQATPTNAATQDTDSAPCKPICLKFCVTLCPQKCCNKGKAAAA 639

Query: 325 SCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFP----PTTPA 450
           + +P +    + T    T++    +  P P C    P    P+ PA
Sbjct: 640 AAAPTKPPTAAPTTAAATQAAPAAMTCPQPACAPQSPMSCMPSCPA 685


>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
          Length = 672

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 439 WAGMTTDNGAMAPGRAGAWTLFSNSL 362
           W+  T D     PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619


>SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)
          Length = 939

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = -3

Query: 670 ISGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL--MISIVPFEIL 497
           +S + +VP+SY    TRP  NG+   +  + A E P+L+  F+    L  +I  +   I 
Sbjct: 162 LSVSNLVPDSYFDAFTRPIINGK---VEEKTAGEGPSLATMFEDDRHLQGVIQSIRDAIS 218

Query: 496 VGIERAWK 473
              + AWK
Sbjct: 219 NAFDMAWK 226


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 565  PTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPR 449
            P   P F+ C +L+ ++  ++ +    RAW+KEV S  R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQYM---RRAWRKEVISSQR 1878


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = +3

Query: 459  EKTSFFQALSIP---TKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSY-GLV 626
            E  S  Q+ + P   T++S G+   +  V  +KP  + G  + T ++  N+S  S     
Sbjct: 2269 EPVSIMQSQNTPPVETELSAGSRTSLPKVSAIKPSVEYGQLDDTEIHETNLSASSIPSEK 2328

Query: 627  VKQVYDSGTIFAPEILDI 680
            VK ++ S T+  P  L I
Sbjct: 2329 VKSLFMSSTLDTPSSLSI 2346


>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
          Length = 509

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 376 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 266
           FS+S + T         KP    +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 10/107 (9%)
 Frame = -3

Query: 691  SSGLMSRISGAKIVPESY-TCLTTRPYENGEMFNMLRRVASEAPTLSP---GFKMCTSLM 524
            S  L     GA   P  + T  T+ PY +          AS +PT+SP       C+++ 
Sbjct: 1201 SQPLFITTPGALFTPLPHETSATSPPYTSASPVPTTTPSASSSPTISPIGSSLAQCSTVD 1260

Query: 523  ISIVPFEILVGIERAWKKEVFS------GPRPVLWAGMTTDNGAMAP 401
                P    +G ERA ++   S      G  P++  G    NG   P
Sbjct: 1261 SMDKPSLRPIGTERACRRATASPLPSMPGISPLIGGGKLVGNGDSVP 1307


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 131  VPKMFHRGCR*RGLATDAADPYLAT-WLQYRAHGKK 235
            VPKMFH     RG+ T+A  P + T +L+ R  G++
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRR 3891


>SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 604 LHSHMVLLLSRYMILELFLHLKFWTSNQKIS 696
           L S +++++ RY+ +   LH + W S +K+S
Sbjct: 145 LLSMLLMMVDRYIAIAWGLHYRIWKSQRKVS 175


>SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)
          Length = 543

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = -3

Query: 574 SEAPTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMT 425
           S  P L P      S    I+P EILVG+ER  +K V  G    L   MT
Sbjct: 258 SNGPPLEPKVWDLESAEWPIIPGEILVGLER--RKPVLKGLLITLCENMT 305


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,377,359
Number of Sequences: 59808
Number of extensions: 549218
Number of successful extensions: 1509
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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