Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0017
         (418 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.018
SB_55368| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.033)           29   1.5  
SB_5217| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.7  
SB_1314| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.7  
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)                   27   8.2  

>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2496

 Score = 35.5 bits (78), Expect = 0.018
 Identities = 18/58 (31%), Positives = 33/58 (56%)
 Frame = +2

Query: 230 DEGLMWILVDKLPRFLYKTLDPNEVNYSIYSISAKDAIAGTACEYILYTYILVLYNTY 403
           DEG+   L+ K+ + L + L  +E+ Y + SI+     + TAC  ++Y   + +Y+TY
Sbjct: 777 DEGVQVALL-KIIQGLLEKLKMSEIEYVVPSIATMATSSSTACRELIYDIFMWVYDTY 833


>SB_55368| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.033)
          Length = 321

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = +2

Query: 53  GTQASASFYDPNTQVLFY---GQVNRDGVGCWNSNKPYTPENNVLIFSDPKLYE--FPND 217
           G   S  FYD     LF    G++   GVG     K    E++V     PK YE  FP D
Sbjct: 45  GNPGSIEFYDIFIATLFSESGGKIPIYGVGHAGHTK--LEESSVFKCGRPKQYEQEFPTD 102

Query: 218 LKIDDE 235
           + +DD+
Sbjct: 103 MHLDDQ 108


>SB_5217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 264

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +1

Query: 208 SKRLKD**RRLNVDPGRQTPTVPVQ 282
           S+RL+D  + LN DPG ++PTVP +
Sbjct: 155 SQRLED--QHLNGDPGSRSPTVPTK 177


>SB_1314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 305 NYSIYSISAKDAIAGTACEYILYTYILVLYN 397
           NY +  ++A D I GT    +  T++ +LYN
Sbjct: 64  NYFVVGLAAADVIVGTVTIPLWVTFVNLLYN 94


>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1283

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +3

Query: 180 YSVIP--NFTNFQTT*RLMTKA*CGSWSTNSHGSCTRPSIPMK*TIAFTVLV 329
           Y  IP  NFT+F  +  ++ +  CG W    H  C R + P+      T LV
Sbjct: 59  YGRIPRWNFTDFWHSFMMIFRVLCGEWIEPLH-DCMRVTNPVSSIFFLTALV 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,328,029
Number of Sequences: 59808
Number of extensions: 321584
Number of successful extensions: 779
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)