Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0011
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   29   2.7  
SB_5940| Best HMM Match : Antimicrobial_3 (HMM E-Value=2.4)            28   6.1  
SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6)            28   6.1  

>SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 133 SSADRAESQHQREDEAQNTYKIHFTEIL*CRRIQNSN 23
           +  D  E + + E+E +++Y+  +TEIL  RR+ + N
Sbjct: 341 NQVDGEEEEEEEEEEEEDSYEDEYTEILQRRRVVSFN 377


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 133  SSADRAESQHQREDEAQNTYKIHFTEIL*CRRIQNSN 23
            +  D  E + + E+E +++Y+  +TEIL  RR+ + N
Sbjct: 985  NQVDGEEEEEEEEEEEEDSYEDEYTEILQRRRVVSFN 1021


>SB_5940| Best HMM Match : Antimicrobial_3 (HMM E-Value=2.4)
          Length = 409

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 184 VASHFLNFLEELPPGLGSSADRAESQHQREDEAQNTYKI 68
           + S  L+ +E+  PG+G   DR  +   R+ EAQ   ++
Sbjct: 12  IMSRILSTIEKTQPGVGVVHDRQRTHDPRDKEAQEEERV 50


>SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6)
          Length = 1953

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 180  RPTFSIFLKSFHLGSGAALTAPRASTN 100
            RP+F + LKS   G+GAA   P   TN
Sbjct: 1831 RPSFKLVLKSLEEGNGAARVRPCRITN 1857


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,890,640
Number of Sequences: 59808
Number of extensions: 289474
Number of successful extensions: 582
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)