Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0005
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30272| Best HMM Match : GDI (HMM E-Value=0)                         87   2e-17
SB_43781| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   2e-16
SB_9517| Best HMM Match : GDI (HMM E-Value=1.8e-14)                    49   3e-06
SB_14075| Best HMM Match : zf-CCHC (HMM E-Value=0.0033)                29   2.4  
SB_19631| Best HMM Match : zf-CCHC (HMM E-Value=0.0088)                29   4.2  
SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)                    28   7.4  
SB_53185| Best HMM Match : RWD (HMM E-Value=4.8e-26)                   27   9.8  
SB_375| Best HMM Match : GalP_UDP_transf (HMM E-Value=3.2)             27   9.8  

>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
          Length = 1199

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 39/64 (60%), Positives = 47/64 (73%)
 Frame = +3

Query: 3   GVRSGNETAKCKQVYCDPSYVPDRVRKKGQVIRCICLLDHPISNTKDALSTQIIIPQKQV 182
           GV++  E AK K V  DPSY PDRVR  G+V+RCIC+L HPI+NT +  S Q+IIPQ QV
Sbjct: 273 GVKTQGEVAKAKVVIGDPSYFPDRVRSIGKVVRCICILSHPIANTNNKQSCQLIIPQNQV 332

Query: 183 ERNS 194
            RNS
Sbjct: 333 NRNS 336


>SB_43781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 38/66 (57%), Positives = 51/66 (77%)
 Frame = +3

Query: 198 IYVSVVSYTHQVAAKGWFIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPID 377
           IY+  VS T+ V  K  ++A+VSTTVET DPE E+ PGL LLG I +KFVSV++ YEP+D
Sbjct: 2   IYICCVSQTNLVTPKDKYLAIVSTTVETADPEKELEPGLKLLGKIDEKFVSVSNLYEPLD 61

Query: 378 DGSQSQ 395
           DG++S+
Sbjct: 62  DGTESK 67


>SB_9517| Best HMM Match : GDI (HMM E-Value=1.8e-14)
          Length = 175

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 24/62 (38%), Positives = 34/62 (54%)
 Frame = +3

Query: 333 RQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETTCLDVLKIYKHGTGEEFDFSKVKL 512
           R K V     Y P       Q+FI +S DA +HF   C D+  +Y+  TGE FDFSK++ 
Sbjct: 110 RAKIVLGDSSYFPDKVKKVGQVFIPKSCDALSHFNKDCQDIEDLYERITGEPFDFSKLQT 169

Query: 513 EL 518
           ++
Sbjct: 170 QI 171



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = +3

Query: 3   GVRSGNETAKCKQVYCDPSYVPDRVRKKGQV 95
           GV S  ETA+ K V  D SY PD+V+K GQV
Sbjct: 101 GVTSQGETARAKIVLGDSSYFPDKVKKVGQV 131


>SB_14075| Best HMM Match : zf-CCHC (HMM E-Value=0.0033)
          Length = 431

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 171 QKQVERNSDIYVSVVSYTHQVAAKGWFI 254
           QK+ E++ D+++ V+  TH+     W I
Sbjct: 160 QKETEKDRDLFLGVIQKTHETKKSDWLI 187


>SB_19631| Best HMM Match : zf-CCHC (HMM E-Value=0.0088)
          Length = 329

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 165 IPQKQVERNSDIYVSVVSYTHQVAAKGWFI 254
           + QK+ E++ D+  SV+  TH+     W I
Sbjct: 132 LTQKETEKDRDLLSSVIQKTHETKKSDWLI 161


>SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)
          Length = 971

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 33  CKQVYCDPSYVPDRVRKKGQVIRCI 107
           CK  YC P Y   R+  +G+ + CI
Sbjct: 453 CKMQYCPPEYDSLRLPPRGECVGCI 477


>SB_53185| Best HMM Match : RWD (HMM E-Value=4.8e-26)
          Length = 534

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 159 IIIPQKQVERNSDIYVSVVSYTHQVAAKGWFIAMVSTTV-ETND 287
           I IP + +   SD+ V +V +  QVA +   +AMV T + E +D
Sbjct: 62  IEIPNRSLGLPSDLLVELVQHLQQVAKESLGMAMVFTLINEAHD 105


>SB_375| Best HMM Match : GalP_UDP_transf (HMM E-Value=3.2)
          Length = 364

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 115 NRQMHRIT*PFLRTRSGT*LGSQ*TCL 35
           NRQMH +  PF    SG+ + +  TCL
Sbjct: 256 NRQMHTLKLPFEHNNSGSSINTYLTCL 282



 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 115 NRQMHRIT*PFLRTRSGT*LGSQ*TCL 35
           NRQMH +  PF    SG+ + +  TCL
Sbjct: 322 NRQMHTLKLPFEHNNSGSSINTYLTCL 348


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,451,800
Number of Sequences: 59808
Number of extensions: 394892
Number of successful extensions: 899
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)