Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A23
         (951 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50203| Best HMM Match : DUF371 (HMM E-Value=5.8)                    28   9.6  
SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_50203| Best HMM Match : DUF371 (HMM E-Value=5.8)
          Length = 349

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = +1

Query: 361 DRNLKIHLRAKNKFVKIFFALDLEQNVTQINF 456
           D N ++HL AKN+++++F  + LE N+ ++ +
Sbjct: 194 DLNDELHLPAKNEYIEVFLKV-LEYNLREVAY 224


>SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 950 GGGXGXGXXGXKGGGRWGCX*XGG 879
           GGG G G  G +GGG +G    GG
Sbjct: 762 GGGYGGGGGGYRGGGGYGGGHRGG 785


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,192,339
Number of Sequences: 59808
Number of extensions: 333097
Number of successful extensions: 811
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2788625034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)