Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A12
         (1062 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)           31   1.6  
SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_298| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   3.6  
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_58175| Best HMM Match : Arm (HMM E-Value=0)                         29   6.3  
SB_56392| Best HMM Match : FARP (HMM E-Value=3.8e-27)                  29   8.4  
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  29   8.4  

>SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)
          Length = 725

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 163 TQRSIRSPANFQGQSDTLAIFTTLSLGTGKWGEGRSSGLWERATKDFLVKVV 318
           T+ +  +PA   G   ++   TTL+L      + RSSG +  A+  FL K+V
Sbjct: 434 TRSATYAPAIMSGCGTSIMFVTTLALAAELVDQDRSSGAFVMASMSFLSKIV 485


>SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1090

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 24/90 (26%), Positives = 36/90 (40%)
 Frame = +3

Query: 72   PVTIQNVFQGVVIPLHSLXCVNAQVSMPPGYAEKYPITSQFSRSVRHPRDIHDFVTWDRE 251
            PV  ++ F GVV+P      +    S+P  Y +    T     S    +           
Sbjct: 880  PVNSEHWFLGVVLPKEKTIVIID--SLPQNYIKPTATTQDSMPSTPEDKPARK----QTS 933

Query: 252  MGGGKVFGTLGESDQGLFGKGGYNREFFND 341
             GGG +F    + D+GLFG G   ++  ND
Sbjct: 934  QGGGGLFDE--DEDEGLFGSGASQKKPSND 961


>SB_298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +3

Query: 246 REMGGGKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAY 371
           R  GGG   G +    +GLFG G Y+ E     RG   G AY
Sbjct: 82  RLFGGGAYSGEVLIRGRGLFGVGAYSGEGLIRGRGLFGGGAY 123


>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 829 HRXPXXHXXXPXXXPSPXPXPXPXPPP 909
           +R P      P   P P P P P PPP
Sbjct: 857 YRRPRPRPRRPPPPPPPPPPPPPPPPP 883


>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1574

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 56   VPSSETCHNSKCIPRCCYPAA--LLXMRERSSFYAS 157
            VPSS+   +++C  R CYPA   LL  RE +  YAS
Sbjct: 1091 VPSSDAQASAQCAKRSCYPATGDLLVGRE-NKIYAS 1125


>SB_58175| Best HMM Match : Arm (HMM E-Value=0)
          Length = 1472

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 150  MPPGYAEKYPITSQFSRSVRHPRDIHD 230
            +PPG   + P T+Q   SVRH R + D
Sbjct: 1368 LPPGERRRRPHTTQSLPSVRHARSVRD 1394


>SB_56392| Best HMM Match : FARP (HMM E-Value=3.8e-27)
          Length = 412

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 210 HPRDIHDFVTWDREMGGGKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYG 374
           H +  H+   W R  G G+     G  DQG FG+    R F  +D+G+   +  G
Sbjct: 127 HHKHHHEEGEWKRTAGPGR----FGREDQGRFGREDQGR-FGREDQGRFGREDQG 176


>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 859 PXXXPSPXPXPXPXPPPXXXXXXP 930
           P   PSP P P P PPP      P
Sbjct: 383 PPPPPSPPPPPQPPPPPPPPPPPP 406


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,458,480
Number of Sequences: 59808
Number of extensions: 507768
Number of successful extensions: 1885
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1676
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3201496110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)