Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A11
         (1018 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   31   1.5  
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.4  
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  30   3.4  
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.9  

>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 19/67 (28%), Positives = 22/67 (32%)
 Frame = +3

Query: 672 PXKXXPPPPLIXXXPPPXXDXXXXXLQPRXXXGPXXXXPPXSPXGPAXGXFXXLLXTXFX 851
           P +  PPPP +   PPP          P    GP    PP     P          +   
Sbjct: 341 PSRGAPPPPSMGMAPPPVGGAAPPPPPPPPVGGPPPPPPPIEGRPP----------SSLG 390

Query: 852 NPXPXPP 872
           NP P PP
Sbjct: 391 NPPPPPP 397


>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 18/66 (27%), Positives = 21/66 (31%)
 Frame = +1

Query: 526 PNXGXLSQXXXXPGGTKXXRGXPPNXXSXXLPPXPXXXXGGGXFXXGXPRXXXXPPRX*S 705
           P    + Q    PGG +     PP       PP P    GGG    G  +    PP    
Sbjct: 472 PAKQIMKQMGKVPGGGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAG 531

Query: 706 XXXPPP 723
               PP
Sbjct: 532 QGGGPP 537


>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +3

Query: 672 PXKXXPPPPLIXXXPPPXXDXXXXXLQPRXXXGPXXXXPPXSPXGP 809
           P    PPPP     PPP         QP     P    PP  P  P
Sbjct: 368 PPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPP 413



 Score = 28.7 bits (61), Expect = 7.9
 Identities = 18/67 (26%), Positives = 19/67 (28%)
 Frame = +3

Query: 672 PXKXXPPPPLIXXXPPPXXDXXXXXLQPRXXXGPXXXXPPXSPXGPAXGXFXXLLXTXFX 851
           P    PPPP     PPP          P+    P    PP  P  P              
Sbjct: 366 PPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPP 425

Query: 852 NPXPXPP 872
            P P PP
Sbjct: 426 PPPPPPP 432


>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 20/76 (26%), Positives = 21/76 (27%)
 Frame = +3

Query: 645 GGNXXXGXXPXKXXPPPPLIXXXPPPXXDXXXXXLQPRXXXGPXXXXPPXSPXGPAXGXF 824
           GG+      P    PPPP     PPP          P     P    PP  P  P     
Sbjct: 81  GGHPPTNFSPNPPYPPPPYPPYPPPPPYPPPPNPPYPPPPNAP-YPPPPNPPYPPPPNAP 139

Query: 825 XXLLXTXFXNPXPXPP 872
                     P P PP
Sbjct: 140 YPPSPNAPYPPPPNPP 155


>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 17/57 (29%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
 Frame = +3

Query: 642 GGGNXXXGXXPXKXXP-PPPLIXXXPPPXXDXXXXXLQPRXXXGPXXXXPPXSPXGP 809
           GGG       P    P PPP     PPP          P    GP    PP +   P
Sbjct: 340 GGGGVNPPPPPTNNPPSPPPPTNNTPPPPPPTNKPPPPPPPTNGPPPPPPPTNGPPP 396


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,072,125
Number of Sequences: 59808
Number of extensions: 164626
Number of successful extensions: 445
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3023635215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)