Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A01
         (934 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         31   1.0  
SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.8  
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)          29   7.1  

>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 15/51 (29%), Positives = 18/51 (35%)
 Frame = +2

Query: 752 PXRAVPSVCHXTXRXXXPPPXXXPPRLPGVFSXPPXXXXPXPXXXXXXXPP 904
           P   +P +   +     PPP   PP L G    PP    P P       PP
Sbjct: 679 PPPPLPVIEGSSLSVPPPPPPPPPPLLSGTLPMPPPPPPPPPGCAGLPPPP 729



 Score = 29.1 bits (62), Expect = 5.4
 Identities = 19/66 (28%), Positives = 21/66 (31%)
 Frame = +2

Query: 707 PTXNISSSXXTXPXXPXRAVPSVCHXTXRXXXPPPXXXPPRLPGVFSXPPXXXXPXPXXX 886
           P   I  S  + P  P    P +   T     PP    PP  PG    PP    P P   
Sbjct: 682 PLPVIEGSSLSVPPPPPPPPPPLLSGTLPMPPPP----PPPPPGCAGLPPPPPSPQPGCA 737

Query: 887 XXXXPP 904
               PP
Sbjct: 738 GLPPPP 743


>SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 737

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 212 KDIEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLN 349
           + IEH  +   K  +QQF+S  K+ D  D S   K+  + ++  L+
Sbjct: 468 RSIEHKIQRLEKKFDQQFSSTEKNMDKNDSSLPKKEIFQQIVTDLS 513


>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 20/63 (31%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
 Frame = +2

Query: 719 ISSSXXTXPXXPXRAVPSV-CHXTXRXXXPPPXXXPPRLPGVFSXPPXXXXPXPXXXXXX 895
           ISSS    P  P  A P+           PPP   PP  P     PP    P P      
Sbjct: 46  ISSSPPPPPPSPPAAAPAAPPPPAAAPAAPPPPAAPPAAPP--PPPPLPAPPPPPAQPAP 103

Query: 896 XPP 904
            PP
Sbjct: 104 QPP 106


>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
          Length = 1671

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 19/60 (31%), Positives = 33/60 (55%)
 Frame = +2

Query: 194  DAPDFFKDIEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQG 373
            D  DFFK++   TKEF +   ++  ++ K   A + S  +KD  E++  Q  A  K+++G
Sbjct: 1012 DITDFFKELGPATKEFAEESVKKVCAVYKF--ALNSSSDFKDFGENMESQSIAIMKTVKG 1069


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,561,238
Number of Sequences: 59808
Number of extensions: 248916
Number of successful extensions: 851
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2717121828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)