Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A14
         (843 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49844| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   9e-17
SB_48656| Best HMM Match : Extensin_2 (HMM E-Value=0.0009)             40   0.003
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_7119| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.2  
SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012)                 28   8.2  

>SB_49844| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 84.6 bits (200), Expect = 9e-17
 Identities = 37/53 (69%), Positives = 45/53 (84%)
 Frame = +2

Query: 5   SVQWLGGQEKWYFTKEQLQNSPSRKCGLDADKELAYRQQAANLIQDMGQRLQV 163
           +V  +   E+WYFTKEQLQNSPSR+ G+DA++EL+YRQQAA LIQDMGQRL V
Sbjct: 21  AVNSVSSDERWYFTKEQLQNSPSRRMGMDAERELSYRQQAATLIQDMGQRLSV 73


>SB_48656| Best HMM Match : Extensin_2 (HMM E-Value=0.0009)
          Length = 392

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 21/52 (40%), Positives = 24/52 (46%)
 Frame = +2

Query: 182 TAIVYMHRFYAFHSFTQFHRNXXXXXXXXXXXKVEEQPRKLEYVIKVAHVCL 337
           T  VY HRFY   SF  F R            KVEE P+K   +IK A+  L
Sbjct: 3   TGAVYFHRFYMIQSFKNFPRWVTGAACLFLAGKVEETPKKCRDIIKTANSLL 54



 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +3

Query: 555 TTMCLQYXPTVVACFCIHLASKWSNWLIPQSYEGRH--WFSYVDKTV 689
           TT+CL++   V+A   + LA+K +N+ I  +   +   W+ +  KTV
Sbjct: 77  TTLCLKHRSEVIAVAMLALAAKLNNYDIQAATGSKEKLWWIHFAKTV 123


>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +2

Query: 14  WLGGQEKWYFTKEQLQNSPSRKCGLDADKE-LAYRQQAANLIQDMGQRLQVSQL 172
           WLG        +E  + SP+ K   DA  +   YRQ +A      G  LQ  QL
Sbjct: 18  WLGNMISLSVRRENTERSPAIKNAFDAILDWTEYRQSSARGFMGSGNDLQAQQL 71


>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1259

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 287 EQPRKLEYVIKVAHVCLHRGEGVNALTPEQYQE-QAQDLVFNENVLLQTL 433
           ++P  +E   K +HV  H      +  PE Y+E  A +   N+N L+Q+L
Sbjct: 275 DEPPTVEKYSKASHVTEHPSRNAESPDPEHYKEATAANNGNNQNSLIQSL 324


>SB_7119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -1

Query: 426 CSRTFSLNTRSCACS*YCSGVRAFTPSPLWRHTWATFITYSSFLGCSST 280
           C  T+S +T   AC+   SG  +  PSP +R+      TY   LG  +T
Sbjct: 134 CEYTYSRDTFIRACNGTWSGASSVRPSPRYRYKSYERQTYYHALGVYNT 182


>SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012)
          Length = 550

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 400 KVLRLLLILFRCQSVHPLTSVEAYV 326
           + +R++ +LF C+SVH L S   YV
Sbjct: 25  QTVRVIKLLFECRSVHDLVSEVGYV 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,476,394
Number of Sequences: 59808
Number of extensions: 555327
Number of successful extensions: 1566
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1564
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)