Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A15
         (861 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               308   3e-84
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         253   2e-67
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   8.5  
SB_25655| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  308 bits (757), Expect = 3e-84
 Identities = 139/212 (65%), Positives = 164/212 (77%), Gaps = 1/212 (0%)
 Frame = +1

Query: 37  HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDR 216
           HRKF APRHGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE ++
Sbjct: 2   HRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVEK 61

Query: 217 PGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 396
           PGSK+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+RRFYKNW
Sbjct: 62  PGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKNW 121

Query: 397 YXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIME 576
                         W D+ G+KSIE+DF  M +YC V+RVI HTQ KLLK RQKKAHIME
Sbjct: 122 CNSKKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQQKLLKMRQKKAHIME 181

Query: 577 IQLNGG-TIEDKVKWAREHLEKPIPGRFCVCP 669
           IQ+NGG  + +KV W RE LE P P R    P
Sbjct: 182 IQVNGGKDVAEKVDWCRERLENPAPVRKVFSP 213



 Score = 68.5 bits (160), Expect = 6e-12
 Identities = 33/56 (58%), Positives = 35/56 (62%)
 Frame = +2

Query: 638 NLSLVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKKHKGLRKVACIGAWH 805
           N + V  VF+ DEMID I             RW TKKLPRK HKGLRKVACIGAWH
Sbjct: 203 NPAPVRKVFSPDEMIDVIGVTKGHGFKGVTYRWGTKKLPRKTHKGLRKVACIGAWH 258


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  253 bits (619), Expect = 2e-67
 Identities = 110/165 (66%), Positives = 132/165 (80%)
 Frame = +1

Query: 37  HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDR 216
           HRKF APRHGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE ++
Sbjct: 50  HRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVEK 109

Query: 217 PGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 396
           PGSK+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+RRFYKNW
Sbjct: 110 PGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKNW 169

Query: 397 YXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQ 531
                         W D+ G+KSIE+DF  M +YC V+RVI HTQ
Sbjct: 170 CNSKKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQ 214


>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1918

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +3

Query: 522 PHSNEAVKTATKEGSHYGNPT*RWYHRGQSEMGQ-RTSGETYP 647
           PH N +  T    G H  NPT    HR  S  GQ R +G   P
Sbjct: 282 PHQNGSNVTNIPVGGHPSNPTPAAIHRSMSVGGQPRVNGPGNP 324


>SB_25655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 40  RKFSAPRHGSMGFYPKKRSRRHRGK-VKAFPKDDPSKPVH 156
           R+F  P+ G +G Y ++  R H GK +   PK +P +  +
Sbjct: 145 RRFWMPKFGHVGPYSEQVKRDHDGKIIDIIPKGNPMEDAY 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,206,487
Number of Sequences: 59808
Number of extensions: 618360
Number of successful extensions: 1515
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1514
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)