Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40020
         (852 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D87435-1|BAA13379.2| 1880|Homo sapiens KIAA0248 protein.               31   4.0  
BC117682-1|AAI17683.1| 1855|Homo sapiens GBF1 protein protein.         31   4.0  
BC117681-1|AAI17682.1| 1855|Homo sapiens GBF1 protein protein.         31   4.0  
AL356420-1|CAH72761.1| 1859|Homo sapiens golgi-specific brefeldi...    31   4.0  
AL160011-3|CAH71625.1| 1859|Homo sapiens golgi-specific brefeldi...    31   4.0  
AL121928-2|CAI12515.1| 1859|Homo sapiens golgi-specific brefeldi...    31   4.0  
AF068755-1|AAD15903.1| 1859|Homo sapiens sec7 domain family memb...    31   4.0  

>D87435-1|BAA13379.2| 1880|Homo sapiens KIAA0248 protein.
          Length = 1880

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 775  GLIKDSHLWPQLTHNGSXTIFFFWLNPSYSSSLTIFTYTSG 653
            GL++++++W  L H G+     F   P+ S  L +FT T G
Sbjct: 913  GLVRENYVWNVLLHRGATPEGIFLRVPTASYDLDLFTMTWG 953


>BC117682-1|AAI17683.1| 1855|Homo sapiens GBF1 protein protein.
          Length = 1855

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 775  GLIKDSHLWPQLTHNGSXTIFFFWLNPSYSSSLTIFTYTSG 653
            GL++++++W  L H G+     F   P+ S  L +FT T G
Sbjct: 892  GLVRENYVWNVLLHRGATPEGIFLRVPTASYDLDLFTMTWG 932


>BC117681-1|AAI17682.1| 1855|Homo sapiens GBF1 protein protein.
          Length = 1855

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 775  GLIKDSHLWPQLTHNGSXTIFFFWLNPSYSSSLTIFTYTSG 653
            GL++++++W  L H G+     F   P+ S  L +FT T G
Sbjct: 892  GLVRENYVWNVLLHRGATPEGIFLRVPTASYDLDLFTMTWG 932


>AL356420-1|CAH72761.1| 1859|Homo sapiens golgi-specific brefeldin A
            resistance factor 1 protein.
          Length = 1859

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 775  GLIKDSHLWPQLTHNGSXTIFFFWLNPSYSSSLTIFTYTSG 653
            GL++++++W  L H G+     F   P+ S  L +FT T G
Sbjct: 892  GLVRENYVWNVLLHRGATPEGIFLRVPTASYDLDLFTMTWG 932


>AL160011-3|CAH71625.1| 1859|Homo sapiens golgi-specific brefeldin A
            resistance factor 1 protein.
          Length = 1859

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 775  GLIKDSHLWPQLTHNGSXTIFFFWLNPSYSSSLTIFTYTSG 653
            GL++++++W  L H G+     F   P+ S  L +FT T G
Sbjct: 892  GLVRENYVWNVLLHRGATPEGIFLRVPTASYDLDLFTMTWG 932


>AL121928-2|CAI12515.1| 1859|Homo sapiens golgi-specific brefeldin A
            resistance factor 1 protein.
          Length = 1859

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 775  GLIKDSHLWPQLTHNGSXTIFFFWLNPSYSSSLTIFTYTSG 653
            GL++++++W  L H G+     F   P+ S  L +FT T G
Sbjct: 892  GLVRENYVWNVLLHRGATPEGIFLRVPTASYDLDLFTMTWG 932


>AF068755-1|AAD15903.1| 1859|Homo sapiens sec7 domain family member
            protein.
          Length = 1859

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 775  GLIKDSHLWPQLTHNGSXTIFFFWLNPSYSSSLTIFTYTSG 653
            GL++++++W  L H G+     F   P+ S  L +FT T G
Sbjct: 892  GLVRENYVWNVLLHRGATPEGIFLRVPTASYDLDLFTMTWG 932


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,006,882
Number of Sequences: 237096
Number of extensions: 2030191
Number of successful extensions: 2863
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2863
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10816958492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)