Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30013X
         (352 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE006463-8|AAK61228.1|  156|Homo sapiens 60S ribosomal protein L...    29   5.5  
X87248-1|CAA60698.1|  341|Homo sapiens HP8 peptide protein.            28   9.5  

>AE006463-8|AAK61228.1|  156|Homo sapiens 60S ribosomal protein L23A
           like protein.
          Length = 156

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -2

Query: 303 LTFPLPKPLKTRTRHSASWKPGTTMSRQRTLYIESCRFLFVNRQKNNRGEESNLQYYSI 127
           LTF  PK L+ R R    WK  +T  R +  +    +F         R EE+N   +++
Sbjct: 44  LTFQRPKTLRRRRRPEYPWK--STPRRNKLGHYAVIKFPLTTESAVKRTEENNTLLFTV 100


>X87248-1|CAA60698.1|  341|Homo sapiens HP8 peptide protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 276 KTRTRHSASWKPGTTMSRQRTLYIESC 196
           +TRTR   +W P T  SR RT     C
Sbjct: 178 RTRTRRPRTWPPRTCSSRSRTAARPPC 204


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,458,598
Number of Sequences: 237096
Number of extensions: 912039
Number of successful extensions: 1643
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1643
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2084089752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)