Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10385
         (811 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X56681-1|CAA40010.1|  347|Homo sapiens junD protein protein.           30   8.6  
X51346-1|CAA35739.1|  303|Homo sapiens protein ( Human jun-D mRN...    30   8.6  
EF044249-1|ABJ53425.1|  347|Homo sapiens jun D proto-oncogene pr...    30   8.6  
AK223630-1|BAD97350.1|  347|Homo sapiens jun D proto-oncogene va...    30   8.6  

>X56681-1|CAA40010.1|  347|Homo sapiens junD protein protein.
          Length = 347

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 13  LRDHVHRLKEQVLEHANGGCHI 78
           LR+ V +LK++VL H N GC +
Sbjct: 317 LREQVAQLKQKVLSHVNSGCQL 338


>X51346-1|CAA35739.1|  303|Homo sapiens protein ( Human jun-D mRNA
           for JUN-D protein. ).
          Length = 303

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 13  LRDHVHRLKEQVLEHANGGCHI 78
           LR+ V +LK++VL H N GC +
Sbjct: 273 LREQVAQLKQKVLSHVNSGCQL 294


>EF044249-1|ABJ53425.1|  347|Homo sapiens jun D proto-oncogene
           protein.
          Length = 347

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 13  LRDHVHRLKEQVLEHANGGCHI 78
           LR+ V +LK++VL H N GC +
Sbjct: 317 LREQVAQLKQKVLSHVNSGCQL 338


>AK223630-1|BAD97350.1|  347|Homo sapiens jun D proto-oncogene
           variant protein.
          Length = 347

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 13  LRDHVHRLKEQVLEHANGGCHI 78
           LR+ V +LK++VL H N GC +
Sbjct: 317 LREQVAQLKQKVLSHVNSGCQL 338


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,849,904
Number of Sequences: 237096
Number of extensions: 2000181
Number of successful extensions: 11536
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11532
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10036353240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)