Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30083
         (851 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF495759-1|AAM15968.1|  127|Homo sapiens unknown protein.              32   2.3  
AK092761-1|BAC03968.1|  315|Homo sapiens protein ( Homo sapiens ...    32   3.0  
AK092453-1|BAC03894.1|  229|Homo sapiens protein ( Homo sapiens ...    32   3.0  
AB209432-1|BAD92669.1|  526|Homo sapiens Ariadne-1 protein homol...    31   4.0  

>AF495759-1|AAM15968.1|  127|Homo sapiens unknown protein.
          Length = 127

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 27/90 (30%), Positives = 37/90 (41%)
 Frame = -2

Query: 409 GAGAAWSTSAGCTEAECSSLLRSLQMHNDVIYPRSKGLFLSLPQRQTMVLLTTAR*VSCA 230
           G     + S  C E +C+S  +S          R+ GL+L L     + L  +      +
Sbjct: 10  GGSCTCAGSCKCKECKCTSCKKS----ECGAISRNLGLWLRLGGNSRLALSASFWGTGLS 65

Query: 229 RGPRRPRSFPLYTSSPRRRWERRASKSADT 140
             P  P SFPL    P+ RW R A  S DT
Sbjct: 66  L-PSLPVSFPLQAFCPKFRWGRTAFFSWDT 94


>AK092761-1|BAC03968.1|  315|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35442 fis, clone SMINT2003128. ).
          Length = 315

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -2

Query: 445 KGCWRNARGSGCGAGAAWSTSAGCTEAECSSLLRSLQMHNDVIYPRS 305
           +G W  A      AG++WS S        + L RSLQ+H+ +I P S
Sbjct: 111 RGSWALAHRDNMAAGSSWSCSR--PRVPVTQLSRSLQVHSLMILPAS 155


>AK092453-1|BAC03894.1|  229|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35134 fis, clone PLACE6009228. ).
          Length = 229

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -2

Query: 445 KGCWRNARGSGCGAGAAWSTSAGCTEAECSSLLRSLQMHNDVIYPRS 305
           +G W  A      AG++WS S        + L RSLQ+H+ +I P S
Sbjct: 25  RGSWALAHRDNMAAGSSWSCSR--PRVPVTQLSRSLQVHSLMILPAS 69


>AB209432-1|BAD92669.1|  526|Homo sapiens Ariadne-1 protein homolog
           variant protein.
          Length = 526

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = -2

Query: 226 GPRRPRSFPLYTSSPRRRWERRASKSAD-TTHVF-EPIEDSASLTRVL 89
           GPRRPR  P  ++S RR   RRA  S +   + F E I++ A++TR+L
Sbjct: 57  GPRRPRPLPA-SASVRRAPARRAMDSDEGYNYEFNEVIQNPATITRIL 103


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,201,980
Number of Sequences: 237096
Number of extensions: 2008956
Number of successful extensions: 5466
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5464
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10816958492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)