Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00023
         (679 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ130711-1|CAB51127.1|  374|Homo sapiens QA79 membrane protein, ...    33   1.2  
AF193441-1|AAF06790.1|  374|Homo sapiens Siglec-7 protein.             33   1.2  
AF178981-1|AAF44346.1|  316|Homo sapiens D-siglec precursor prot...    33   1.2  
BC070109-1|AAH70109.1|  239|Homo sapiens chromosome 22 open read...    31   5.0  
BC002924-1|AAH02924.2|  230|Homo sapiens C22orf13 protein protein.     31   5.0  
AK054681-1|BAB70791.1|  239|Homo sapiens protein ( Homo sapiens ...    31   5.0  
AB049215-1|BAB68411.1|  200|Homo sapiens CG13760 gene product [D...    31   5.0  

>AJ130711-1|CAB51127.1|  374|Homo sapiens QA79 membrane protein,
           splice product airm-2 protein.
          Length = 374

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = -3

Query: 437 ARL*TIGRYTFLM*SKSIQRQYSYLSAPNVITDPPDPLTVLL----GTTST 297
           AR+   GRY F M   +I+  Y Y      +TDPP  LTV +    GT ST
Sbjct: 113 ARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVTDPPQNLTVTVFQGEGTAST 163


>AF193441-1|AAF06790.1|  374|Homo sapiens Siglec-7 protein.
          Length = 374

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = -3

Query: 437 ARL*TIGRYTFLM*SKSIQRQYSYLSAPNVITDPPDPLTVLL----GTTST 297
           AR+   GRY F M   +I+  Y Y      +TDPP  LTV +    GT ST
Sbjct: 113 ARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVTDPPQNLTVTVFQGEGTAST 163


>AF178981-1|AAF44346.1|  316|Homo sapiens D-siglec precursor
           protein.
          Length = 316

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = -3

Query: 437 ARL*TIGRYTFLM*SKSIQRQYSYLSAPNVITDPPDPLTVLL----GTTST 297
           AR+   GRY F M   +I+  Y Y      +TDPP  LTV +    GT ST
Sbjct: 113 ARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVTDPPQNLTVTVFQGEGTAST 163


>BC070109-1|AAH70109.1|  239|Homo sapiens chromosome 22 open reading
           frame 13 protein.
          Length = 239

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 493 AIVLVDAGLLSCDLCKHN-KLGSEQ*VGTHFLCKVNRYSG 377
           AIVLV++G+L CDLC    K       G H  C+   Y G
Sbjct: 146 AIVLVNSGVLHCDLCSSPVKYCCFTPSGHHCFCRTPDYQG 185


>BC002924-1|AAH02924.2|  230|Homo sapiens C22orf13 protein protein.
          Length = 230

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 493 AIVLVDAGLLSCDLCKHN-KLGSEQ*VGTHFLCKVNRYSG 377
           AIVLV++G+L CDLC    K       G H  C+   Y G
Sbjct: 136 AIVLVNSGVLHCDLCSSPVKYCCFTPSGHHCFCRTPDYQG 175


>AK054681-1|BAB70791.1|  239|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30119 fis, clone BRACE1000070. ).
          Length = 239

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 493 AIVLVDAGLLSCDLCKHN-KLGSEQ*VGTHFLCKVNRYSG 377
           AIVLV++G+L CDLC    K       G H  C+   Y G
Sbjct: 146 AIVLVNSGVLHCDLCSSPVKYCCFTPSGHHCFCRTPDYQG 185


>AB049215-1|BAB68411.1|  200|Homo sapiens CG13760 gene product
           [Drosophila melanogaster] homolog protein.
          Length = 200

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 493 AIVLVDAGLLSCDLCKHN-KLGSEQ*VGTHFLCKVNRYSG 377
           AIVLV++G+L CDLC    K       G H  C+   Y G
Sbjct: 107 AIVLVNSGVLHCDLCSSPVKYCCFTPSGHHCFCRTPDYQG 146


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,261,260
Number of Sequences: 237096
Number of extensions: 2175381
Number of successful extensions: 5200
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5200
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)