Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0064.Seq
         (403 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC030597-1|AAH30597.1|  698|Homo sapiens ATRIP protein protein.        29   5.8  
BC020563-1|AAH20563.1|  764|Homo sapiens three prime repair exon...    29   5.8  
BC014153-1|AAH14153.2|  764|Homo sapiens three prime repair exon...    29   5.8  
AK022405-1|BAB14029.1|  571|Homo sapiens protein ( Homo sapiens ...    29   5.8  
AF451323-1|AAL38042.1|  791|Homo sapiens ATR-interacting protein...    29   5.8  

>BC030597-1|AAH30597.1|  698|Homo sapiens ATRIP protein protein.
          Length = 698

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +1

Query: 43  SSRPSGKRRETVPTPYKFEL 102
           S  PSGK RETVP    FEL
Sbjct: 2   SKNPSGKNRETVPIKDNFEL 21


>BC020563-1|AAH20563.1|  764|Homo sapiens three prime repair
           exonuclease 1 protein.
          Length = 764

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +1

Query: 43  SSRPSGKRRETVPTPYKFEL 102
           S  PSGK RETVP    FEL
Sbjct: 95  SKNPSGKNRETVPIKDNFEL 114


>BC014153-1|AAH14153.2|  764|Homo sapiens three prime repair
           exonuclease 1 protein.
          Length = 764

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +1

Query: 43  SSRPSGKRRETVPTPYKFEL 102
           S  PSGK RETVP    FEL
Sbjct: 95  SKNPSGKNRETVPIKDNFEL 114


>AK022405-1|BAB14029.1|  571|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12343 fis, clone MAMMA1002292. ).
          Length = 571

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +1

Query: 43  SSRPSGKRRETVPTPYKFEL 102
           S  PSGK RETVP    FEL
Sbjct: 2   SKNPSGKNRETVPIKDNFEL 21


>AF451323-1|AAL38042.1|  791|Homo sapiens ATR-interacting protein
           protein.
          Length = 791

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +1

Query: 43  SSRPSGKRRETVPTPYKFEL 102
           S  PSGK RETVP    FEL
Sbjct: 95  SKNPSGKNRETVPIKDNFEL 114


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,605,942
Number of Sequences: 237096
Number of extensions: 888869
Number of successful extensions: 995
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2928276690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)