Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0055.Seq
         (560 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S...   128   2e-29
CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.               128   2e-29
BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23 p...   128   2e-29
AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23 p...   119   8e-27
Y11681-2|CAA72377.1|  138|Homo sapiens mitochondrial ribosomal p...    35   0.17 
CR407609-1|CAG28537.1|  138|Homo sapiens MRPS12 protein.               35   0.17 
BC007499-1|AAH07499.1|  138|Homo sapiens mitochondrial ribosomal...    35   0.17 
BC006424-1|AAH06424.1|  138|Homo sapiens mitochondrial ribosomal...    35   0.17 
BC001617-1|AAH01617.1|  138|Homo sapiens mitochondrial ribosomal...    35   0.17 
AF058761-1|AAC64704.1|  138|Homo sapiens ribosomal protein S12 p...    35   0.17 
AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.     30   4.8  

>D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S28
           homologue protein.
          Length = 143

 Score =  128 bits (308), Expect = 2e-29
 Identities = 57/66 (86%), Positives = 63/66 (95%)
 Frame = +2

Query: 53  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 232
           +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15  SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74

Query: 233 IKNGKK 250
           IKNGKK
Sbjct: 75  IKNGKK 80



 Score =  123 bits (297), Expect = 4e-28
 Identities = 59/65 (90%), Positives = 60/65 (92%)
 Frame = +1

Query: 244 KESDAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 423
           K+  AFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KK
Sbjct: 79  KKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKK 138

Query: 424 ERPRS 438
           ERPRS
Sbjct: 139 ERPRS 143


>CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.
          Length = 143

 Score =  128 bits (308), Expect = 2e-29
 Identities = 57/66 (86%), Positives = 63/66 (95%)
 Frame = +2

Query: 53  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 232
           +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15  SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74

Query: 233 IKNGKK 250
           IKNGKK
Sbjct: 75  IKNGKK 80



 Score =  123 bits (297), Expect = 4e-28
 Identities = 59/65 (90%), Positives = 60/65 (92%)
 Frame = +1

Query: 244 KESDAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 423
           K+  AFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KK
Sbjct: 79  KKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKK 138

Query: 424 ERPRS 438
           ERPRS
Sbjct: 139 ERPRS 143


>BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23
           protein.
          Length = 143

 Score =  128 bits (308), Expect = 2e-29
 Identities = 57/66 (86%), Positives = 63/66 (95%)
 Frame = +2

Query: 53  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 232
           +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15  SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74

Query: 233 IKNGKK 250
           IKNGKK
Sbjct: 75  IKNGKK 80



 Score =  123 bits (297), Expect = 4e-28
 Identities = 59/65 (90%), Positives = 60/65 (92%)
 Frame = +1

Query: 244 KESDAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 423
           K+  AFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KK
Sbjct: 79  KKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKK 138

Query: 424 ERPRS 438
           ERPRS
Sbjct: 139 ERPRS 143


>AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23
           protein.
          Length = 59

 Score =  119 bits (286), Expect = 8e-27
 Identities = 56/59 (94%), Positives = 56/59 (94%)
 Frame = +1

Query: 259 FVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPR 435
           FVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPR
Sbjct: 1   FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59


>Y11681-2|CAA72377.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 precursor protein.
          Length = 138

 Score = 35.1 bits (77), Expect = 0.17
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +2

Query: 119 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 232
           K  P  G    KG+VL     + K+PNSA RKC RV+L
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85


>CR407609-1|CAG28537.1|  138|Homo sapiens MRPS12 protein.
          Length = 138

 Score = 35.1 bits (77), Expect = 0.17
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +2

Query: 119 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 232
           K  P  G    KG+VL     + K+PNSA RKC RV+L
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85


>BC007499-1|AAH07499.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 35.1 bits (77), Expect = 0.17
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +2

Query: 119 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 232
           K  P  G    KG+VL     + K+PNSA RKC RV+L
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85


>BC006424-1|AAH06424.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 35.1 bits (77), Expect = 0.17
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +2

Query: 119 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 232
           K  P  G    KG+VL     + K+PNSA RKC RV+L
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85


>BC001617-1|AAH01617.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 35.1 bits (77), Expect = 0.17
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +2

Query: 119 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 232
           K  P  G    KG+VL     + K+PNSA RKC RV+L
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85


>AF058761-1|AAC64704.1|  138|Homo sapiens ribosomal protein S12
           protein.
          Length = 138

 Score = 35.1 bits (77), Expect = 0.17
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +2

Query: 119 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 232
           K  P  G    KG+VL     + K+PNSA RKC RV+L
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85


>AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.
          Length = 1332

 Score = 30.3 bits (65), Expect = 4.8
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = +1

Query: 97  SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AAQLCHPQMRPCTAH*ERKESDA 258
           SPHG +M G P          RP ES+C         PQ RPC       ++DA
Sbjct: 37  SPHGPDMSG-PLEGADGGGDPRPGESFCPGGVPSPGPPQHRPCPGPSLADDTDA 89


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,782,345
Number of Sequences: 237096
Number of extensions: 1833870
Number of successful extensions: 6137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6137
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5646880600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)