Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0011.Seq
         (844 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC101616-1|AAI01617.1| 1102|Homo sapiens WD repeat domain 72 pro...    33   1.7  
BC101614-1|AAI01615.1| 1102|Homo sapiens WD repeat domain 72 pro...    33   1.7  
AK096055-1|BAC04689.1|  775|Homo sapiens protein ( Homo sapiens ...    33   1.7  
AB196633-1|BAE53435.1| 1857|Homo sapiens C8orfK23 protein protein.     33   1.7  
U66146-1|AAC51165.1|  592|Homo sapiens CD6e protein.                   30   9.1  
L78838-2|AAL40085.1|  592|Homo sapiens T cell surface glycoprote...    30   9.1  

>BC101616-1|AAI01617.1| 1102|Homo sapiens WD repeat domain 72
           protein.
          Length = 1102

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -1

Query: 661 PIALIDGFSPLDVGXHVL*KWTLVPNWEQHSTLSRSILXIYKG 533
           P++  DG SP ++   V   WTL  N+++H T+S+SI+  + G
Sbjct: 358 PVSKFDG-SPREIP--VTATWTLQDNFDKHDTMSQSIIDYFSG 397


>BC101614-1|AAI01615.1| 1102|Homo sapiens WD repeat domain 72
           protein.
          Length = 1102

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -1

Query: 661 PIALIDGFSPLDVGXHVL*KWTLVPNWEQHSTLSRSILXIYKG 533
           P++  DG SP ++   V   WTL  N+++H T+S+SI+  + G
Sbjct: 358 PVSKFDG-SPREIP--VTATWTLQDNFDKHDTMSQSIIDYFSG 397


>AK096055-1|BAC04689.1|  775|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38736 fis, clone KIDNE2010989, weakly similar to
           Rattus norvegicus TGF-beta resistance-associated protein
           (TRAG) ).
          Length = 775

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -1

Query: 661 PIALIDGFSPLDVGXHVL*KWTLVPNWEQHSTLSRSILXIYKG 533
           P++  DG SP ++   V   WTL  N+++H T+S+SI+  + G
Sbjct: 358 PVSKFDG-SPREIP--VTATWTLQDNFDKHDTMSQSIIDYFSG 397


>AB196633-1|BAE53435.1| 1857|Homo sapiens C8orfK23 protein protein.
          Length = 1857

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +1

Query: 274  RITIHWP-SFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPN--SCAXEWRMA 444
            R+   WP S    +TGK  A  +L+  +    +P G   K P P+A PN    +  W M+
Sbjct: 1749 RVRGWWPFSKSKELTGKVEAEFHLVTAEEAEKNPVGKARKEPEPLAKPNRPDTSFSWFMS 1808

Query: 445  NCKR*YFV 468
              K  Y++
Sbjct: 1809 PFKCLYYL 1816


>U66146-1|AAC51165.1|  592|Homo sapiens CD6e protein.
          Length = 592

 Score = 30.3 bits (65), Expect = 9.1
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 310 VTGKTLALPNLIALQHIPLS-PAGVIAKRPAPIALPNSCAXEWRMAN 447
           + GK  ALP ++  QH+P + PAG  + +P PI +P   +   R+ +
Sbjct: 426 IKGK-YALPVMVNHQHLPTTIPAGSNSYQPVPITIPKEDSQRHRVTD 471


>L78838-2|AAL40085.1|  592|Homo sapiens T cell surface glycoprotein
           CD6 isoform e protein.
          Length = 592

 Score = 30.3 bits (65), Expect = 9.1
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 310 VTGKTLALPNLIALQHIPLS-PAGVIAKRPAPIALPNSCAXEWRMAN 447
           + GK  ALP ++  QH+P + PAG  + +P PI +P   +   R+ +
Sbjct: 426 IKGK-YALPVMVNHQHLPTTIPAGSNSYQPVPITIPKEDSQRHRVTD 471


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,695,376
Number of Sequences: 237096
Number of extensions: 2419179
Number of successful extensions: 7566
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7566
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10649685938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)