Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0033
         (728 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR457260-1|CAG33541.1|  247|Homo sapiens FLJ10525 protein.             30   7.4  
BC000948-1|AAH00948.2|  247|Homo sapiens transmembrane protein 3...    30   7.4  
AK023062-1|BAB14384.1|  247|Homo sapiens protein ( Homo sapiens ...    30   7.4  

>CR457260-1|CAG33541.1|  247|Homo sapiens FLJ10525 protein.
          Length = 247

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = -1

Query: 209 TGNGVHAASGIRCSMPDATLTASYQAYSFTTY*NCWFCRPDKAFAPHPAFY--ALLRNTL 36
           T NG   A  ++  M +   TA + +  FT Y +  F  P        +FY  ALL N L
Sbjct: 5   TPNGPQGAGAVQFMMTNKLDTAMWLSRLFTVYCSALFVLPLLGLHEAASFYQRALLANAL 64

Query: 35  VLDTLRLH 12
               LRLH
Sbjct: 65  T-SALRLH 71


>BC000948-1|AAH00948.2|  247|Homo sapiens transmembrane protein 33
           protein.
          Length = 247

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = -1

Query: 209 TGNGVHAASGIRCSMPDATLTASYQAYSFTTY*NCWFCRPDKAFAPHPAFY--ALLRNTL 36
           T NG   A  ++  M +   TA + +  FT Y +  F  P        +FY  ALL N L
Sbjct: 5   TPNGPQGAGAVQFMMTNKLDTAMWLSRLFTVYCSALFVLPLLGLHEAASFYQRALLANAL 64

Query: 35  VLDTLRLH 12
               LRLH
Sbjct: 65  T-SALRLH 71


>AK023062-1|BAB14384.1|  247|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13000 fis, clone NT2RP3000333, highly similar to
           Rattus norvegicus db83 mRNA. ).
          Length = 247

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = -1

Query: 209 TGNGVHAASGIRCSMPDATLTASYQAYSFTTY*NCWFCRPDKAFAPHPAFY--ALLRNTL 36
           T NG   A  ++  M +   TA + +  FT Y +  F  P        +FY  ALL N L
Sbjct: 5   TPNGPQGAGAVQFMMTNKLDTAMWLSRLFTVYCSALFVLPLLGLHEAASFYQRALLANAL 64

Query: 35  VLDTLRLH 12
               LRLH
Sbjct: 65  T-SALRLH 71


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,388,672
Number of Sequences: 237096
Number of extensions: 1802865
Number of successful extensions: 3471
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3471
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)