Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0023
         (692 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC039829-1|AAH39829.1|  887|Homo sapiens integrator complex subu...    31   5.2  
BC013358-1|AAH13358.1|  827|Homo sapiens INTS6 protein protein.        31   5.2  
AL354820-1|CAI15586.1|  887|Homo sapiens integrator complex subu...    31   5.2  
AL137780-2|CAI12905.1|  887|Homo sapiens integrator complex subu...    31   5.2  
AL117626-1|CAB56020.1|  476|Homo sapiens hypothetical protein pr...    31   5.2  
AF141326-1|AAD39481.1|  615|Homo sapiens RNA helicase HDB/DICE1 ...    31   5.2  
AF097645-1|AAF03046.1|  887|Homo sapiens candidate tumor suppres...    31   5.2  

>BC039829-1|AAH39829.1|  887|Homo sapiens integrator complex subunit
           6 protein.
          Length = 887

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 548 KREQNGLNCKYADVFIAGPETNERARDGLPSVMGINRSCR 667
           K ++ G+    AD F+AGP+ N+  R G P++ GI +  R
Sbjct: 620 KLDKKGMMIDEADEFVAGPQ-NKHKRPGEPNMQGIPKRRR 658


>BC013358-1|AAH13358.1|  827|Homo sapiens INTS6 protein protein.
          Length = 827

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 548 KREQNGLNCKYADVFIAGPETNERARDGLPSVMGINRSCR 667
           K ++ G+    AD F+AGP+ N+  R G P++ GI +  R
Sbjct: 620 KLDKKGMMIDEADEFVAGPQ-NKHKRPGEPNMQGIPKRRR 658


>AL354820-1|CAI15586.1|  887|Homo sapiens integrator complex subunit
           6 protein.
          Length = 887

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 548 KREQNGLNCKYADVFIAGPETNERARDGLPSVMGINRSCR 667
           K ++ G+    AD F+AGP+ N+  R G P++ GI +  R
Sbjct: 620 KLDKKGMMIDEADEFVAGPQ-NKHKRPGEPNMQGIPKRRR 658


>AL137780-2|CAI12905.1|  887|Homo sapiens integrator complex subunit
           6 protein.
          Length = 887

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 548 KREQNGLNCKYADVFIAGPETNERARDGLPSVMGINRSCR 667
           K ++ G+    AD F+AGP+ N+  R G P++ GI +  R
Sbjct: 620 KLDKKGMMIDEADEFVAGPQ-NKHKRPGEPNMQGIPKRRR 658


>AL117626-1|CAB56020.1|  476|Homo sapiens hypothetical protein
           protein.
          Length = 476

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 548 KREQNGLNCKYADVFIAGPETNERARDGLPSVMGINRSCR 667
           K ++ G+    AD F+AGP+ N+  R G P++ GI +  R
Sbjct: 209 KLDKKGMMIDEADEFVAGPQ-NKHKRPGEPNMQGIPKRRR 247


>AF141326-1|AAD39481.1|  615|Homo sapiens RNA helicase HDB/DICE1
           protein.
          Length = 615

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 548 KREQNGLNCKYADVFIAGPETNERARDGLPSVMGINRSCR 667
           K ++ G+    AD F+AGP+ N+  R G P++ GI +  R
Sbjct: 348 KLDKKGMMIDEADEFVAGPQ-NKHKRPGEPNMQGIPKRRR 386


>AF097645-1|AAF03046.1|  887|Homo sapiens candidate tumor suppressor
           protein DICE1 protein.
          Length = 887

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 548 KREQNGLNCKYADVFIAGPETNERARDGLPSVMGINRSCR 667
           K ++ G+    AD F+AGP+ N+  R G P++ GI +  R
Sbjct: 620 KLDKKGMMIDEADEFVAGPQ-NKHKRPGEPNMQGIPKRRR 658


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,001,849
Number of Sequences: 237096
Number of extensions: 2154111
Number of successful extensions: 3586
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3586
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)