Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0073.Seq
         (538 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X51730-1|CAA36018.1|  933|Homo sapiens protein ( Human mRNA and ...    30   4.5  
M15716-1|AAA60081.1|  933|Homo sapiens progesterone receptor pro...    30   4.5  
AY525610-1|AAS00096.1|  933|Homo sapiens progesterone receptor p...    30   4.5  
AF016381-1|AAD01587.1|  933|Homo sapiens progesterone receptor p...    30   4.5  
AB085845-1|BAC11013.1|  803|Homo sapiens delta 6/2 progesterone ...    30   4.5  
AB085844-1|BAC11012.1|  690|Homo sapiens delta4+6/2 progesterone...    30   4.5  
AB085843-1|BAC11011.1|  764|Homo sapiens delta 3+6/2 progesteron...    30   4.5  
AB085683-1|BAC06585.1|  695|Homo sapiens Progesterone receptor p...    30   4.5  
AB084248-1|BAB91074.1|  831|Homo sapiens delta 4 progesterone re...    30   4.5  

>X51730-1|CAA36018.1|  933|Homo sapiens protein ( Human mRNA and
           promoter DNA for progesterone receptor. ).
          Length = 933

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
 Frame = -2

Query: 264 PTSYLIKCVSXDLFCHXPSGYGMSSPPRCFPS-----AMTCPSSNEAYGEY*AVGSGLAL 100
           P SYL+   +   F   P G     PPR  PS     A+T   ++ +     A  SG  L
Sbjct: 401 PRSYLVAGANPAAFPDFPLGPPPPLPPRATPSRPGEAAVTAAPASASVSS--ASSSGSTL 458

Query: 99  PLALLKSMGDGNHSPSGGPYARLPTKA 19
              L K+ G     P  GP+A  P KA
Sbjct: 459 ECILYKAEG---APPQQGPFAPPPCKA 482


>M15716-1|AAA60081.1|  933|Homo sapiens progesterone receptor
           protein.
          Length = 933

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
 Frame = -2

Query: 264 PTSYLIKCVSXDLFCHXPSGYGMSSPPRCFPS-----AMTCPSSNEAYGEY*AVGSGLAL 100
           P SYL+   +   F   P G     PPR  PS     A+T   ++ +     A  SG  L
Sbjct: 401 PRSYLVAGANPAAFPDFPLGPPPPLPPRATPSRPGEAAVTAAPASASVSS--ASSSGSTL 458

Query: 99  PLALLKSMGDGNHSPSGGPYARLPTKA 19
              L K+ G     P  GP+A  P KA
Sbjct: 459 ECILYKAEG---APPQQGPFAPPPCKA 482


>AY525610-1|AAS00096.1|  933|Homo sapiens progesterone receptor
           protein.
          Length = 933

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
 Frame = -2

Query: 264 PTSYLIKCVSXDLFCHXPSGYGMSSPPRCFPS-----AMTCPSSNEAYGEY*AVGSGLAL 100
           P SYL+   +   F   P G     PPR  PS     A+T   ++ +     A  SG  L
Sbjct: 401 PRSYLVAGANPAAFPDFPLGPPPPLPPRATPSRPGEAAVTAAPASASVSS--ASSSGSTL 458

Query: 99  PLALLKSMGDGNHSPSGGPYARLPTKA 19
              L K+ G     P  GP+A  P KA
Sbjct: 459 ECILYKAEG---APPQQGPFAPPPCKA 482


>AF016381-1|AAD01587.1|  933|Homo sapiens progesterone receptor
           protein.
          Length = 933

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
 Frame = -2

Query: 264 PTSYLIKCVSXDLFCHXPSGYGMSSPPRCFPS-----AMTCPSSNEAYGEY*AVGSGLAL 100
           P SYL+   +   F   P G     PPR  PS     A+T   ++ +     A  SG  L
Sbjct: 401 PRSYLVAGANPAAFPDFPLGPPPPLPPRATPSRPGEAAVTAAPASASVSS--ASSSGSTL 458

Query: 99  PLALLKSMGDGNHSPSGGPYARLPTKA 19
              L K+ G     P  GP+A  P KA
Sbjct: 459 ECILYKAEG---APPQQGPFAPPPCKA 482


>AB085845-1|BAC11013.1|  803|Homo sapiens delta 6/2 progesterone
           receptor protein.
          Length = 803

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
 Frame = -2

Query: 264 PTSYLIKCVSXDLFCHXPSGYGMSSPPRCFPS-----AMTCPSSNEAYGEY*AVGSGLAL 100
           P SYL+   +   F   P G     PPR  PS     A+T   ++ +     A  SG  L
Sbjct: 401 PRSYLVAGANPAAFPDFPLGPPPPLPPRATPSRPGEAAVTAAPASASVSS--ASSSGSTL 458

Query: 99  PLALLKSMGDGNHSPSGGPYARLPTKA 19
              L K+ G     P  GP+A  P KA
Sbjct: 459 ECILYKAEG---APPQQGPFAPPPCKA 482


>AB085844-1|BAC11012.1|  690|Homo sapiens delta4+6/2 progesterone
           receptor protein.
          Length = 690

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
 Frame = -2

Query: 264 PTSYLIKCVSXDLFCHXPSGYGMSSPPRCFPS-----AMTCPSSNEAYGEY*AVGSGLAL 100
           P SYL+   +   F   P G     PPR  PS     A+T   ++ +     A  SG  L
Sbjct: 401 PRSYLVAGANPAAFPDFPLGPPPPLPPRATPSRPGEAAVTAAPASASVSS--ASSSGSTL 458

Query: 99  PLALLKSMGDGNHSPSGGPYARLPTKA 19
              L K+ G     P  GP+A  P KA
Sbjct: 459 ECILYKAEG---APPQQGPFAPPPCKA 482


>AB085843-1|BAC11011.1|  764|Homo sapiens delta 3+6/2 progesterone
           receptor protein.
          Length = 764

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
 Frame = -2

Query: 264 PTSYLIKCVSXDLFCHXPSGYGMSSPPRCFPS-----AMTCPSSNEAYGEY*AVGSGLAL 100
           P SYL+   +   F   P G     PPR  PS     A+T   ++ +     A  SG  L
Sbjct: 401 PRSYLVAGANPAAFPDFPLGPPPPLPPRATPSRPGEAAVTAAPASASVSS--ASSSGSTL 458

Query: 99  PLALLKSMGDGNHSPSGGPYARLPTKA 19
              L K+ G     P  GP+A  P KA
Sbjct: 459 ECILYKAEG---APPQQGPFAPPPCKA 482


>AB085683-1|BAC06585.1|  695|Homo sapiens Progesterone receptor
           protein.
          Length = 695

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
 Frame = -2

Query: 264 PTSYLIKCVSXDLFCHXPSGYGMSSPPRCFPS-----AMTCPSSNEAYGEY*AVGSGLAL 100
           P SYL+   +   F   P G     PPR  PS     A+T   ++ +     A  SG  L
Sbjct: 401 PRSYLVAGANPAAFPDFPLGPPPPLPPRATPSRPGEAAVTAAPASASVSS--ASSSGSTL 458

Query: 99  PLALLKSMGDGNHSPSGGPYARLPTKA 19
              L K+ G     P  GP+A  P KA
Sbjct: 459 ECILYKAEG---APPQQGPFAPPPCKA 482


>AB084248-1|BAB91074.1|  831|Homo sapiens delta 4 progesterone
           receptor protein.
          Length = 831

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
 Frame = -2

Query: 264 PTSYLIKCVSXDLFCHXPSGYGMSSPPRCFPS-----AMTCPSSNEAYGEY*AVGSGLAL 100
           P SYL+   +   F   P G     PPR  PS     A+T   ++ +     A  SG  L
Sbjct: 401 PRSYLVAGANPAAFPDFPLGPPPPLPPRATPSRPGEAAVTAAPASASVSS--ASSSGSTL 458

Query: 99  PLALLKSMGDGNHSPSGGPYARLPTKA 19
              L K+ G     P  GP+A  P KA
Sbjct: 459 ECILYKAEG---APPQQGPFAPPPCKA 482


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,946,122
Number of Sequences: 237096
Number of extensions: 1290088
Number of successful extensions: 2492
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2492
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)