Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0007.Seq
         (329 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR457334-1|CAG33615.1|  351|Homo sapiens FLJ21103 protein.             31   0.65 
BC001647-1|AAH01647.1|  351|Homo sapiens family with sequence si...    31   0.65 
BC001340-1|AAH01340.1|  351|Homo sapiens family with sequence si...    31   0.65 
AK024756-1|BAB14987.1|  351|Homo sapiens protein ( Homo sapiens ...    31   0.65 

>CR457334-1|CAG33615.1|  351|Homo sapiens FLJ21103 protein.
          Length = 351

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 197 SXNFTSTEKLRNWCWQQK*KLSILXLHRWYLNTTGKVKSP 316
           S + T  +K+  W  Q+K KLS+L +H  Y N +G V  P
Sbjct: 181 SLDLTDEKKVLEWA-QEKRKLSVLHIHGVYTNPSGIVLHP 219


>BC001647-1|AAH01647.1|  351|Homo sapiens family with sequence
           similarity 118, member B protein.
          Length = 351

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 197 SXNFTSTEKLRNWCWQQK*KLSILXLHRWYLNTTGKVKSP 316
           S + T  +K+  W  Q+K KLS+L +H  Y N +G V  P
Sbjct: 181 SLDLTDEKKVLEWA-QEKRKLSVLHIHGVYTNPSGIVLHP 219


>BC001340-1|AAH01340.1|  351|Homo sapiens family with sequence
           similarity 118, member B protein.
          Length = 351

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 197 SXNFTSTEKLRNWCWQQK*KLSILXLHRWYLNTTGKVKSP 316
           S + T  +K+  W  Q+K KLS+L +H  Y N +G V  P
Sbjct: 181 SLDLTDEKKVLEWA-QEKRKLSVLHIHGVYTNPSGIVLHP 219


>AK024756-1|BAB14987.1|  351|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21103 fis, clone CAS04883. ).
          Length = 351

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 197 SXNFTSTEKLRNWCWQQK*KLSILXLHRWYLNTTGKVKSP 316
           S + T  +K+  W  Q+K KLS+L +H  Y N +G V  P
Sbjct: 181 SLDLTDEKKVLEWA-QEKRKLSVLHIHGVYTNPSGIVLHP 219


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,738,954
Number of Sequences: 237096
Number of extensions: 633145
Number of successful extensions: 5156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5156
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1743854340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)