Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0044
         (495 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF471507-1|AAQ05682.1|  130|Homo sapiens Ig heavy chain variable...    32   1.3  
DQ100832-1|AAZ08839.1|  119|Homo sapiens immunoglobulin heavy ch...    30   5.1  
AF491924-1|AAM90244.1|  121|Homo sapiens immunoglobulin heavy ch...    30   5.1  
AF235609-1|AAK13739.1|   70|Homo sapiens immunoglobulin heavy ch...    29   6.7  
AF087422-1|AAC72931.1|  127|Homo sapiens immunoglobulin heavy ch...    29   6.7  
AF174078-1|AAD53824.1|  130|Homo sapiens immunoglobulin heavy ch...    29   8.9  

>AF471507-1|AAQ05682.1|  130|Homo sapiens Ig heavy chain variable
           region, VH3 family protein.
          Length = 130

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 393 MRLGPTAIKYCRRMAPSRPIAR-WRQYYYH 307
           +R   TA+ YC R   SR  +R W +YYY+
Sbjct: 85  LRAEDTAVYYCARFGGSRKYSRGWNEYYYY 114


>DQ100832-1|AAZ08839.1|  119|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 119

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 378 TAIKYCRRMAPSRPIARWRQYYYHLNI 298
           TA+ YC R  P  P+ R R YYY +++
Sbjct: 90  TAVYYCARGYPDTPVVR-RYYYYGMDV 115


>AF491924-1|AAM90244.1|  121|Homo sapiens immunoglobulin heavy chain
           protein.
          Length = 121

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 378 TAIKYCRRMAPSRPIARWRQYYYHLNI 298
           TA+ YC R +P+ P+  +  YYY +++
Sbjct: 90  TAVYYCARGSPTPPMVLYYYYYYGMDV 116


>AF235609-1|AAK13739.1|   70|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 70

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 393 MRLGPTAIKYCRRMAPSRPIARWRQYYYHLNI 298
           +R   TA+ YC R  P   I+ W  YYY +++
Sbjct: 37  LRAEDTAVYYCARRGPIH-ISSWYYYYYGMDV 67


>AF087422-1|AAC72931.1|  127|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 127

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 378 TAIKYCRRMAPSRPIARWRQYYYHLNI 298
           TA+ YC R  P  P+ R R YYY + +
Sbjct: 90  TAVYYCARAYPDTPMVR-RYYYYSVEV 115


>AF174078-1|AAD53824.1|  130|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 130

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 378 TAIKYCRRMAPSRPIARWRQYYYHLNI 298
           TA+ YC R A  +P  R   YYY +++
Sbjct: 92  TAVYYCARHADEQPTIRTYYYYYGMDV 118


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,276,247
Number of Sequences: 237096
Number of extensions: 1593212
Number of successful extensions: 4128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4128
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4479766258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)