Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a08f
         (618 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC033588-1|AAH33588.1|  131|Homo sapiens transmembrane protein 3...    99   1e-20
AL953870-2|CAI41375.1|  131|Homo sapiens transmembrane protein 3...    99   1e-20
AL732579-1|CAI39920.2|  131|Homo sapiens transmembrane protein 3...    99   1e-20
AJ406941-1|CAC27580.1|  191|Homo sapiens keratin associated prot...    31   3.3  

>BC033588-1|AAH33588.1|  131|Homo sapiens transmembrane protein 32
           protein.
          Length = 131

 Score = 99.1 bits (236), Expect = 1e-20
 Identities = 43/97 (44%), Positives = 67/97 (69%)
 Frame = +2

Query: 173 SFHKVIVIIGFLSLFHTAFSATQHRSYLRITSQEFTTLPLDIVIQAVVSLFAVMWGVLNV 352
           S  K +V IG  +L H AFSA QHRSY+R+T +E  +LP+DIV+Q +++     +G++++
Sbjct: 4   SLWKGLVGIGLFALAHAAFSAAQHRSYMRLTEKEDESLPIDIVLQTLLAFAVTCYGIVHI 63

Query: 353 AGNLREIPAAAELNAIKWETQNNLPSFYIFNHRGKAL 463
           AG  +++ A +EL    ++T  N PSFY+FNHRG+ L
Sbjct: 64  AGEFKDMDATSELKNKTFDTLRNHPSFYVFNHRGRVL 100


>AL953870-2|CAI41375.1|  131|Homo sapiens transmembrane protein 32
           protein.
          Length = 131

 Score = 99.1 bits (236), Expect = 1e-20
 Identities = 43/97 (44%), Positives = 67/97 (69%)
 Frame = +2

Query: 173 SFHKVIVIIGFLSLFHTAFSATQHRSYLRITSQEFTTLPLDIVIQAVVSLFAVMWGVLNV 352
           S  K +V IG  +L H AFSA QHRSY+R+T +E  +LP+DIV+Q +++     +G++++
Sbjct: 4   SLWKGLVGIGLFALAHAAFSAAQHRSYMRLTEKEDESLPIDIVLQTLLAFAVTCYGIVHI 63

Query: 353 AGNLREIPAAAELNAIKWETQNNLPSFYIFNHRGKAL 463
           AG  +++ A +EL    ++T  N PSFY+FNHRG+ L
Sbjct: 64  AGEFKDMDATSELKNKTFDTLRNHPSFYVFNHRGRVL 100


>AL732579-1|CAI39920.2|  131|Homo sapiens transmembrane protein 32
           protein.
          Length = 131

 Score = 99.1 bits (236), Expect = 1e-20
 Identities = 43/97 (44%), Positives = 67/97 (69%)
 Frame = +2

Query: 173 SFHKVIVIIGFLSLFHTAFSATQHRSYLRITSQEFTTLPLDIVIQAVVSLFAVMWGVLNV 352
           S  K +V IG  +L H AFSA QHRSY+R+T +E  +LP+DIV+Q +++     +G++++
Sbjct: 4   SLWKGLVGIGLFALAHAAFSAAQHRSYMRLTEKEDESLPIDIVLQTLLAFAVTCYGIVHI 63

Query: 353 AGNLREIPAAAELNAIKWETQNNLPSFYIFNHRGKAL 463
           AG  +++ A +EL    ++T  N PSFY+FNHRG+ L
Sbjct: 64  AGEFKDMDATSELKNKTFDTLRNHPSFYVFNHRGRVL 100


>AJ406941-1|CAC27580.1|  191|Homo sapiens keratin associated protein
           4.9 protein.
          Length = 191

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 298 CHPSCGQFVCCHVGSVECGG*SSRNTSCC*IKCYQ 402
           C P C Q VCC      C   S   T+CC   CY+
Sbjct: 31  CRPQCCQSVCC---QPTCSRPSCCQTTCCRTTCYR 62


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,970,374
Number of Sequences: 237096
Number of extensions: 1578058
Number of successful extensions: 3080
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3031
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)