Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B13
         (643 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR542077-1|CAG46874.1|  326|Homo sapiens PEX10 protein.                39   0.017
BC018198-1|AAH18198.1|  326|Homo sapiens peroxisome biogenesis f...    38   0.023
BC000543-1|AAH00543.1|  346|Homo sapiens peroxisome biogenesis f...    38   0.023
AL513477-1|CAI22603.1|  346|Homo sapiens peroxisome biogenesis f...    38   0.023
AF060502-1|AAC18133.1|  326|Homo sapiens peroxisome assembly pro...    38   0.023
AB013818-1|BAA87895.1|  326|Homo sapiens peroxisome biogenesis f...    38   0.023

>CR542077-1|CAG46874.1|  326|Homo sapiens PEX10 protein.
          Length = 326

 Score = 38.7 bits (86), Expect = 0.017
 Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
 Frame = +1

Query: 334 MALPVAQPAEVLRAWQKDDQYEKQLADSISKLLPLQHGS-------KAIP-ISSLLYKSF 489
           MA   A+P EV+RA QKD+ Y   L  +    L    G+       K +  +S + Y   
Sbjct: 1   MAPAAARPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL 60

Query: 490 TTLKDLXTLXEQYSGIVQVXDS 555
           TTL    TL E+Y  I+QV  S
Sbjct: 61  TTLAGYQTLGEEYVSIIQVDPS 82


>BC018198-1|AAH18198.1|  326|Homo sapiens peroxisome biogenesis
           factor 10 protein.
          Length = 326

 Score = 38.3 bits (85), Expect = 0.023
 Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
 Frame = +1

Query: 334 MALPVAQPAEVLRAWQKDDQYEKQLADSISKLLPLQHGS-------KAIPI-SSLLYKSF 489
           MA   A P EV+RA QKD+ Y   L  +    L    G+       K + + S + Y   
Sbjct: 1   MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL 60

Query: 490 TTLKDLXTLXEQYSGIVQVXDS 555
           TTL    TL E+Y  I+QV  S
Sbjct: 61  TTLAGYQTLGEEYVSIIQVDPS 82


>BC000543-1|AAH00543.1|  346|Homo sapiens peroxisome biogenesis
           factor 10 protein.
          Length = 346

 Score = 38.3 bits (85), Expect = 0.023
 Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
 Frame = +1

Query: 334 MALPVAQPAEVLRAWQKDDQYEKQLADSISKLLPLQHGS-------KAIPI-SSLLYKSF 489
           MA   A P EV+RA QKD+ Y   L  +    L    G+       K + + S + Y   
Sbjct: 1   MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL 60

Query: 490 TTLKDLXTLXEQYSGIVQVXDS 555
           TTL    TL E+Y  I+QV  S
Sbjct: 61  TTLAGYQTLGEEYVSIIQVDPS 82


>AL513477-1|CAI22603.1|  346|Homo sapiens peroxisome biogenesis
           factor 10 protein.
          Length = 346

 Score = 38.3 bits (85), Expect = 0.023
 Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
 Frame = +1

Query: 334 MALPVAQPAEVLRAWQKDDQYEKQLADSISKLLPLQHGS-------KAIPI-SSLLYKSF 489
           MA   A P EV+RA QKD+ Y   L  +    L    G+       K + + S + Y   
Sbjct: 1   MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL 60

Query: 490 TTLKDLXTLXEQYSGIVQVXDS 555
           TTL    TL E+Y  I+QV  S
Sbjct: 61  TTLAGYQTLGEEYVSIIQVDPS 82


>AF060502-1|AAC18133.1|  326|Homo sapiens peroxisome assembly
           protein PEX10 protein.
          Length = 326

 Score = 38.3 bits (85), Expect = 0.023
 Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
 Frame = +1

Query: 334 MALPVAQPAEVLRAWQKDDQYEKQLADSISKLLPLQHGS-------KAIPI-SSLLYKSF 489
           MA   A P EV+RA QKD+ Y   L  +    L    G+       K + + S + Y   
Sbjct: 1   MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL 60

Query: 490 TTLKDLXTLXEQYSGIVQVXDS 555
           TTL    TL E+Y  I+QV  S
Sbjct: 61  TTLAGYQTLGEEYVSIIQVDPS 82


>AB013818-1|BAA87895.1|  326|Homo sapiens peroxisome biogenesis
           factor (peroxin) 10 protein.
          Length = 326

 Score = 38.3 bits (85), Expect = 0.023
 Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
 Frame = +1

Query: 334 MALPVAQPAEVLRAWQKDDQYEKQLADSISKLLPLQHGS-------KAIPI-SSLLYKSF 489
           MA   A P EV+RA QKD+ Y   L  +    L    G+       K + + S + Y   
Sbjct: 1   MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL 60

Query: 490 TTLKDLXTLXEQYSGIVQVXDS 555
           TTL    TL E+Y  I+QV  S
Sbjct: 61  TTLAGYQTLGEEYVSIIQVDPS 82


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,490,837
Number of Sequences: 237096
Number of extensions: 1329929
Number of successful extensions: 3011
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3010
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)