Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A10
         (780 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY029347-1|AAK38155.1| 1007|Homo sapiens serine/threonine-protei...    31   4.7  
AL138831-3|CAI20480.1| 1007|Homo sapiens PRP4 pre-mRNA processin...    31   4.7  
AL033383-1|CAI42121.1| 1007|Homo sapiens PRP4 pre-mRNA processin...    31   4.7  
AF283465-1|AAM19101.1| 1007|Homo sapiens PRP4 kinase protein.          31   4.7  
AB011108-1|BAA25462.1| 1028|Homo sapiens KIAA0536 protein protein.     31   4.7  
BC039260-1|AAH39260.1|  765|Homo sapiens RBM12B protein protein.       31   6.1  
X70040-1|CAA49634.1| 1400|Homo sapiens tyrosine kinase protein.        30   8.1  

>AY029347-1|AAK38155.1| 1007|Homo sapiens serine/threonine-protein
           kinase protein.
          Length = 1007

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 596 PGLERSRSPGLECSRSPI-MERSSLLAIRCPRSPAR*HQTXQRWFRHPRHT*GRRR 760
           P   RSRSP    SRSP+   RS     R PR   R  ++  R  R  R   GRRR
Sbjct: 438 PTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRR 493


>AL138831-3|CAI20480.1| 1007|Homo sapiens PRP4 pre-mRNA processing
           factor 4 homolog B (yeast) protein.
          Length = 1007

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 596 PGLERSRSPGLECSRSPI-MERSSLLAIRCPRSPAR*HQTXQRWFRHPRHT*GRRR 760
           P   RSRSP    SRSP+   RS     R PR   R  ++  R  R  R   GRRR
Sbjct: 438 PTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRR 493


>AL033383-1|CAI42121.1| 1007|Homo sapiens PRP4 pre-mRNA processing
           factor 4 homolog B (yeast) protein.
          Length = 1007

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 596 PGLERSRSPGLECSRSPI-MERSSLLAIRCPRSPAR*HQTXQRWFRHPRHT*GRRR 760
           P   RSRSP    SRSP+   RS     R PR   R  ++  R  R  R   GRRR
Sbjct: 438 PTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRR 493


>AF283465-1|AAM19101.1| 1007|Homo sapiens PRP4 kinase protein.
          Length = 1007

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 596 PGLERSRSPGLECSRSPI-MERSSLLAIRCPRSPAR*HQTXQRWFRHPRHT*GRRR 760
           P   RSRSP    SRSP+   RS     R PR   R  ++  R  R  R   GRRR
Sbjct: 438 PTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRR 493


>AB011108-1|BAA25462.1| 1028|Homo sapiens KIAA0536 protein protein.
          Length = 1028

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 596 PGLERSRSPGLECSRSPI-MERSSLLAIRCPRSPAR*HQTXQRWFRHPRHT*GRRR 760
           P   RSRSP    SRSP+   RS     R PR   R  ++  R  R  R   GRRR
Sbjct: 459 PTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRR 514


>BC039260-1|AAH39260.1|  765|Homo sapiens RBM12B protein protein.
          Length = 765

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 576 DWNAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSG 680
           D+  P   D+  P  +DW  P  + + G P   SG
Sbjct: 602 DFRCPPEDDFRHPREEDWRRPPPEHFGGLPQSTSG 636


>X70040-1|CAA49634.1| 1400|Homo sapiens tyrosine kinase protein.
          Length = 1400

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 584 CPRPPGLERSRSPGLECSRSPIMERSS 664
           CP PPGLE + SP   C   P++  SS
Sbjct: 407 CPNPPGLE-ALSPNTSCRHFPLLVSSS 432


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,092,696
Number of Sequences: 237096
Number of extensions: 1998223
Number of successful extensions: 6992
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6954
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)