Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0016
         (763 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80759-1|AAB91450.1|  182|Homo sapiens CAGH4 alternate open read...    35   0.28 
AY312370-1|AAQ85138.1|   74|Homo sapiens AAA1 variant VI protein.      31   5.9  

>U80759-1|AAB91450.1|  182|Homo sapiens CAGH4 alternate open reading
           frame protein.
          Length = 182

 Score = 35.1 bits (77), Expect = 0.28
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 591 LLPK--KLGLPCR*KKSSGRTGRXAPSA*DRLPIGVAIPRDFVPAWPKNAXAPXSP 752
           LLP   +L LP R   +S  T R  PS    LP+ + IP  F P  P+    P +P
Sbjct: 19  LLPSLPRLSLPFRLPWASTATARCPPSPLGSLPLMLCIPTGFTPTQPRAPRPPWTP 74


>AY312370-1|AAQ85138.1|   74|Homo sapiens AAA1 variant VI protein.
          Length = 74

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +2

Query: 254 LADHWKAYIKIN--EEFAEKTVHALHLLNKQKKD 349
           L D+WKAY++ N   +F+   +HA   L ++K+D
Sbjct: 13  LGDYWKAYVRRNAGRQFSHCNLHAHQFLVRRKQD 46


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,481,100
Number of Sequences: 237096
Number of extensions: 2996476
Number of successful extensions: 7806
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7801
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9144232952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)