Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0028
         (792 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK125693-1|BAC86247.1|  321|Homo sapiens protein ( Homo sapiens ...    31   4.8  
BC106949-1|AAI06950.1|  600|Homo sapiens RSHL3 protein protein.        31   6.3  
AL132795-2|CAI20497.1|  716|Homo sapiens protein ( ial spokehead...    31   6.3  
AL132795-1|CAI20496.1|  469|Homo sapiens protein ( Human DNA seq...    31   6.3  
AK130129-1|BAC85294.1|  370|Homo sapiens   protein.                    30   8.3  

>AK125693-1|BAC86247.1|  321|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43705 fis, clone TESOP2001818. ).
          Length = 321

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 3   PIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAER 110
           P+P  G+ T   ++PS+L+ ++  G P W ED+  R
Sbjct: 228 PLPPKGTETFFCVLPSALRAALSCG-PSWGEDSGPR 262


>BC106949-1|AAI06950.1|  600|Homo sapiens RSHL3 protein protein.
          Length = 600

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -3

Query: 307 LGDLLRIWVRTGATSPRTPSPEFSRSAESIRTPPQMRCSSRSEPYLP 167
           LG+  R W    A SP+   PE S   E+ + P   R S  S P+ P
Sbjct: 17  LGETRRPWEGKTAASPQYSEPESSEPLEAKQGPETGRQSRSSRPWSP 63


>AL132795-2|CAI20497.1|  716|Homo sapiens protein ( ial
           spokehead-like 1, a novel  ).).
          Length = 716

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -3

Query: 307 LGDLLRIWVRTGATSPRTPSPEFSRSAESIRTPPQMRCSSRSEPYLP 167
           LG+  R W    A SP+   PE S   E+ + P   R S  S P+ P
Sbjct: 17  LGETRRPWEGKTAASPQYSEPESSEPLEAKQGPETGRQSRSSRPWSP 63


>AL132795-1|CAI20496.1|  469|Homo sapiens protein ( Human DNA
           sequence from clone RP3-412I7 on chromosome 6q22.1-22.33
            Contains a gene similar to murine radial spokehead-like
           1, a novel  ).
          Length = 469

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -3

Query: 307 LGDLLRIWVRTGATSPRTPSPEFSRSAESIRTPPQMRCSSRSEPYLP 167
           LG+  R W    A SP+   PE S   E+ + P   R S  S P+ P
Sbjct: 17  LGETRRPWEGKTAASPQYSEPESSEPLEAKQGPETGRQSRSSRPWSP 63


>AK130129-1|BAC85294.1|  370|Homo sapiens   protein.
          Length = 370

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 280 RTGATSPRTPSPEFSRSAESIRTPPQMRCSSRSEPYLPSI 161
           R  A++PRTP     R A + RTP   R    S P++P I
Sbjct: 287 RRTASAPRTPGVPRRRRASAPRTPGVPRRRRASAPWVPGI 326


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,488,950
Number of Sequences: 237096
Number of extensions: 2812347
Number of successful extensions: 8789
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8782
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9701808132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)