Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0131
         (760 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC047726-1|AAH47726.1|  273|Homo sapiens OAF homolog (Drosophila...    34   0.64 
AY459296-1|AAR23238.1|  273|Homo sapiens NS5ATP13TP2 protein.          34   0.64 
AJ276485-1|CAB81951.1|  283|Homo sapiens integral membrane trans...    32   2.0  
U32576-1|AAA91653.1|  127|Homo sapiens apoC-IV protein.                31   6.0  
BC020723-1|AAH20723.1|  127|Homo sapiens apolipoprotein C-IV pro...    31   6.0  
AY422953-1|AAQ91812.1|  127|Homo sapiens apolipoprotein C-IV pro...    31   6.0  
AL357374-7|CAI13605.1|  336|Homo sapiens RNA binding motif prote...    31   6.0  

>BC047726-1|AAH47726.1|  273|Homo sapiens OAF homolog (Drosophila)
           protein.
          Length = 273

 Score = 33.9 bits (74), Expect = 0.64
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = -1

Query: 673 CTLLSGFRLPWPPSC---CH--ERPTPFMVSHERFLGALNYVWFIPQRQFCL 533
           C    G  L W P     CH  +RPTP+         + ++ +++PQRQ CL
Sbjct: 214 CVCRYGLSLAWYPCMLKYCHSRDRPTPYKCGIRSCQKSYSFDFYVPQRQLCL 265


>AY459296-1|AAR23238.1|  273|Homo sapiens NS5ATP13TP2 protein.
          Length = 273

 Score = 33.9 bits (74), Expect = 0.64
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = -1

Query: 673 CTLLSGFRLPWPPSC---CH--ERPTPFMVSHERFLGALNYVWFIPQRQFCL 533
           C    G  L W P     CH  +RPTP+         + ++ +++PQRQ CL
Sbjct: 214 CVCRYGLSLAWYPCMLKYCHSRDRPTPYKCGIRSCQKSYSFDFYVPQRQLCL 265


>AJ276485-1|CAB81951.1|  283|Homo sapiens integral membrane
           transporter protein protein.
          Length = 283

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +3

Query: 204 MVNYAWSGRSQGKP*WR 254
           MVNYAW+GRSQ K  WR
Sbjct: 1   MVNYAWAGRSQRKLWWR 17



 Score = 31.1 bits (67), Expect = 4.5
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 254 AVAILTCKSIVGTGYRG 304
           +VA+LTCKS+V  GYRG
Sbjct: 18  SVAVLTCKSVVRPGYRG 34


>U32576-1|AAA91653.1|  127|Homo sapiens apoC-IV protein.
          Length = 127

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = -1

Query: 658 GFRLPWPPSCCHERPTPFMVSHERFLGALNYVWFIPQRQFCLPKLAHLAPHQISG 494
           G++  W PS        +   H R LG L   WF+  +   L K   L P  + G
Sbjct: 68  GWQWFWSPSTFRGFMQTYYDDHLRDLGPLTKAWFLESKDSLLKKTHSLCPRLVCG 122


>BC020723-1|AAH20723.1|  127|Homo sapiens apolipoprotein C-IV
           protein.
          Length = 127

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = -1

Query: 658 GFRLPWPPSCCHERPTPFMVSHERFLGALNYVWFIPQRQFCLPKLAHLAPHQISG 494
           G++  W PS        +   H R LG L   WF+  +   L K   L P  + G
Sbjct: 68  GWQWFWSPSTFRGFMQTYYDDHLRDLGPLTKAWFLESKDSLLKKTHSLCPRLVCG 122


>AY422953-1|AAQ91812.1|  127|Homo sapiens apolipoprotein C-IV
           protein.
          Length = 127

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = -1

Query: 658 GFRLPWPPSCCHERPTPFMVSHERFLGALNYVWFIPQRQFCLPKLAHLAPHQISG 494
           G++  W PS        +   H R LG L   WF+  +   L K   L P  + G
Sbjct: 68  GWQWFWSPSTFRGFMQTYYDDHLRDLGPLTKAWFLESKDSLLKKTHSLCPRLVCG 122


>AL357374-7|CAI13605.1|  336|Homo sapiens RNA binding motif protein
           39 protein.
          Length = 336

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = -3

Query: 323 MVRLVFRPYTQFRRSICTSESLRPPSGFPLTST*PGIVHHLSGPSICAQSAPSFTD 156
           M+R +F P+ +F  S C  ++L   +GF L    P  V H++     A SA SF D
Sbjct: 137 MLRGIFEPFGRFSDSECAKKALEQLNGFELAGR-PMKVGHVT-ERTDASSASSFLD 190


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,194,751
Number of Sequences: 237096
Number of extensions: 2589773
Number of successful extensions: 8136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8136
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)