Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0122
         (490 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276485-1|CAB81951.1|  283|Homo sapiens integral membrane trans...    41   0.003
AY048119-1|AAK85701.1|  673|Homo sapiens RAS guanyl releasing pr...    29   6.5  
AF448437-1|AAL87858.1|  673|Homo sapiens guanyl nucleotide relea...    29   6.5  

>AJ276485-1|CAB81951.1|  283|Homo sapiens integral membrane
           transporter protein protein.
          Length = 283

 Score = 40.7 bits (91), Expect = 0.003
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = +1

Query: 187 MVNYAWSGRSQGKP*WRTVAILT 255
           MVNYAW+GRSQ K  WR+VA+LT
Sbjct: 1   MVNYAWAGRSQRKLWWRSVAVLT 23


>AY048119-1|AAK85701.1|  673|Homo sapiens RAS guanyl releasing
           protein 4 protein.
          Length = 673

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 23/71 (32%), Positives = 34/71 (47%)
 Frame = -1

Query: 379 DETVLKFYIDASYPEGNFGRNQLLDGSISLSPLYPVPTIDLQSESLRSSIRVSPDFDLTR 200
           +E + +F+   +  EGN  + +L D S  LSP  P P + + S  L    +VS  FD   
Sbjct: 143 EEVIGRFWATVAR-EGNSAQRRLGDSSDLLSPGGPGPPLPMSSPGLGKKRKVSLLFD--- 198

Query: 199 HSSPSFGSQHL 167
           H      +QHL
Sbjct: 199 HLETGELAQHL 209


>AF448437-1|AAL87858.1|  673|Homo sapiens guanyl nucleotide
           releasing protein 4 protein.
          Length = 673

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 23/71 (32%), Positives = 34/71 (47%)
 Frame = -1

Query: 379 DETVLKFYIDASYPEGNFGRNQLLDGSISLSPLYPVPTIDLQSESLRSSIRVSPDFDLTR 200
           +E + +F+   +  EGN  + +L D S  LSP  P P + + S  L    +VS  FD   
Sbjct: 143 EEVIGRFWATVAR-EGNSAQRRLGDSSDLLSPGGPGPPLPMSSPGLGKKRKVSLLFD--- 198

Query: 199 HSSPSFGSQHL 167
           H      +QHL
Sbjct: 199 HLETGELAQHL 209


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,583,116
Number of Sequences: 237096
Number of extensions: 1423270
Number of successful extensions: 6381
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6381
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)