Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0119
         (745 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276485-1|CAB81951.1|  283|Homo sapiens integral membrane trans...    32   1.9  
AL357374-7|CAI13605.1|  336|Homo sapiens RNA binding motif prote...    31   5.8  

>AJ276485-1|CAB81951.1|  283|Homo sapiens integral membrane
           transporter protein protein.
          Length = 283

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +3

Query: 204 MVNYAWSGRSQGKP*WR 254
           MVNYAW+GRSQ K  WR
Sbjct: 1   MVNYAWAGRSQRKLWWR 17



 Score = 31.1 bits (67), Expect = 4.4
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 254 AVAILTCKSIVGTGYRG 304
           +VA+LTCKS+V  GYRG
Sbjct: 18  SVAVLTCKSVVRPGYRG 34


>AL357374-7|CAI13605.1|  336|Homo sapiens RNA binding motif protein
           39 protein.
          Length = 336

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = -3

Query: 323 MVRLVFRPYTQFRRSICTSESLRPPSGFPLTST*PGIVHHLSGPSICAQSAPSFTD 156
           M+R +F P+ +F  S C  ++L   +GF L    P  V H++     A SA SF D
Sbjct: 137 MLRGIFEPFGRFSDSECAKKALEQLNGFELAGR-PMKVGHVT-ERTDASSASSFLD 190


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,592,963
Number of Sequences: 237096
Number of extensions: 2488824
Number of successful extensions: 8361
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8361
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)