Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0005
         (744 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF041835-1|AAD36991.1| 1587|Homo sapiens laminin gamma 3 chain p...    32   1.9  
AL583807-1|CAH69983.1| 1587|Homo sapiens laminin, gamma 3 protein.     31   5.8  
AL355872-3|CAI39529.1| 1587|Homo sapiens laminin, gamma 3 protein.     31   5.8  

>AF041835-1|AAD36991.1| 1587|Homo sapiens laminin gamma 3 chain
            precursor protein.
          Length = 1587

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +1

Query: 457  TFLKYKHMQTKFSGNYPSTRSCYPRES*LDPFTLANNKTVCVISGQVHTRARLALKNLDE 636
            T   ++HM T+ +    +      R++  +P T+A ++     + Q+H  AR AL     
Sbjct: 1278 TVASWQHMATEAARTLQTAAQATLRQT--EPLTMARSRLTATFASQLHQGARAALTQASS 1335

Query: 637  SVQ 645
            SVQ
Sbjct: 1336 SVQ 1338


>AL583807-1|CAH69983.1| 1587|Homo sapiens laminin, gamma 3 protein.
          Length = 1587

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +1

Query: 457  TFLKYKHMQTKFSGNYPSTRSCYPRES*LDPFTLANNKTVCVISGQVHTRARLALKNLDE 636
            T   ++HM T+ +    +      R++  +P T A ++     + Q+H  AR AL     
Sbjct: 1278 TVASWQHMATEAARTLQTAAQATLRQT--EPLTKARSRLTATSASQLHQEARAALTQASS 1335

Query: 637  SVQ 645
            SVQ
Sbjct: 1336 SVQ 1338


>AL355872-3|CAI39529.1| 1587|Homo sapiens laminin, gamma 3 protein.
          Length = 1587

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +1

Query: 457  TFLKYKHMQTKFSGNYPSTRSCYPRES*LDPFTLANNKTVCVISGQVHTRARLALKNLDE 636
            T   ++HM T+ +    +      R++  +P T A ++     + Q+H  AR AL     
Sbjct: 1278 TVASWQHMATEAARTLQTAAQATLRQT--EPLTKARSRLTATSASQLHQEARAALTQASS 1335

Query: 637  SVQ 645
            SVQ
Sbjct: 1336 SVQ 1338


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,113,072
Number of Sequences: 237096
Number of extensions: 1705893
Number of successful extensions: 3336
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3336
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)