Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0044
         (475 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL133215-11|CAI10925.1|  684|Homo sapiens progressive external o...    36   0.054
AL133215-10|CAI10924.1|  582|Homo sapiens progressive external o...    36   0.054
AF292005-1|AAK69559.1|  582|Homo sapiens truncated putative T7-l...    36   0.054
AF292004-1|AAK69558.1|  684|Homo sapiens putative T7-like mitoch...    36   0.054

>AL133215-11|CAI10925.1|  684|Homo sapiens progressive external
           ophthalmoplegia 1 protein.
          Length = 684

 Score = 36.3 bits (80), Expect = 0.054
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
 Frame = -1

Query: 349 YQKQ-IHNIGLQDIPKITVTEIRKVLRQKGFAVQDGFXXXXXXXXXXXTEQNCEDSKV-- 179
           Y+K+ +  + +  +P +T TEIR+ LR  G   QDG            + Q    + V  
Sbjct: 40  YRKETLQALDMPVLP-VTATEIRQYLRGHGIPFQDGHSCLRALSPFAESSQLKGQTGVTT 98

Query: 178 ----YINKTTGYFLCPKCNLHGDW 119
               +I+KTTG+FLC      G W
Sbjct: 99  SFSLFIDKTTGHFLCMTSLAEGSW 122


>AL133215-10|CAI10924.1|  582|Homo sapiens progressive external
           ophthalmoplegia 1 protein.
          Length = 582

 Score = 36.3 bits (80), Expect = 0.054
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
 Frame = -1

Query: 349 YQKQ-IHNIGLQDIPKITVTEIRKVLRQKGFAVQDGFXXXXXXXXXXXTEQNCEDSKV-- 179
           Y+K+ +  + +  +P +T TEIR+ LR  G   QDG            + Q    + V  
Sbjct: 40  YRKETLQALDMPVLP-VTATEIRQYLRGHGIPFQDGHSCLRALSPFAESSQLKGQTGVTT 98

Query: 178 ----YINKTTGYFLCPKCNLHGDW 119
               +I+KTTG+FLC      G W
Sbjct: 99  SFSLFIDKTTGHFLCMTSLAEGSW 122


>AF292005-1|AAK69559.1|  582|Homo sapiens truncated putative T7-like
           mitochondrial DNA helicase protein.
          Length = 582

 Score = 36.3 bits (80), Expect = 0.054
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
 Frame = -1

Query: 349 YQKQ-IHNIGLQDIPKITVTEIRKVLRQKGFAVQDGFXXXXXXXXXXXTEQNCEDSKV-- 179
           Y+K+ +  + +  +P +T TEIR+ LR  G   QDG            + Q    + V  
Sbjct: 40  YRKETLQALDMPVLP-VTATEIRQYLRGHGIPFQDGHSCLRALSPFAESSQLKGQTGVTT 98

Query: 178 ----YINKTTGYFLCPKCNLHGDW 119
               +I+KTTG+FLC      G W
Sbjct: 99  SFSLFIDKTTGHFLCMTSLAEGSW 122


>AF292004-1|AAK69558.1|  684|Homo sapiens putative T7-like
           mitochondrial DNA helicase protein.
          Length = 684

 Score = 36.3 bits (80), Expect = 0.054
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
 Frame = -1

Query: 349 YQKQ-IHNIGLQDIPKITVTEIRKVLRQKGFAVQDGFXXXXXXXXXXXTEQNCEDSKV-- 179
           Y+K+ +  + +  +P +T TEIR+ LR  G   QDG            + Q    + V  
Sbjct: 40  YRKETLQALDMPVLP-VTATEIRQYLRGHGIPFQDGHSCLRALSPFAESSQLKGQTGVTT 98

Query: 178 ----YINKTTGYFLCPKCNLHGDW 119
               +I+KTTG+FLC      G W
Sbjct: 99  SFSLFIDKTTGHFLCMTSLAEGSW 122


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,419,978
Number of Sequences: 237096
Number of extensions: 1081155
Number of successful extensions: 2218
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2214
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4156838854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)