Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0087
         (396 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ236549-1|CAB43010.1|  107|Homo sapiens anti-HCV E2 antibody, V...    30   3.2  
AY320566-1|AAQ21877.1|   77|Homo sapiens immunoglobulin kappa ch...    29   4.2  

>AJ236549-1|CAB43010.1|  107|Homo sapiens anti-HCV E2 antibody, VK
           segment protein.
          Length = 107

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -3

Query: 160 RFEGWGSRCNYTETLQLISQGGWRIYVVDVYGLQ*PLNTRWAVSSSTHISNK 5
           RF G GS  ++T T+  +    + +Y   +YG     N+RW     T +  K
Sbjct: 61  RFSGSGSGTDFTLTISRLEPEDFAVYYCQLYG-----NSRWTFGQGTKVEIK 107


>AY320566-1|AAQ21877.1|   77|Homo sapiens immunoglobulin kappa chain
           variable region protein.
          Length = 77

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 160 RFEGWGSRCNYTETLQLISQGGWRIYVVDVYG 65
           RF GWGS  ++T T+  +    + +Y    YG
Sbjct: 40  RFSGWGSGTDFTLTISRLEPEDFAVYYCQQYG 71


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,190,133
Number of Sequences: 237096
Number of extensions: 1536629
Number of successful extensions: 2264
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2264
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)