Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0083
         (636 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC004637-1|AAC15471.1|  156|Homo sapiens KIAA0589 protein.             31   3.4  
AB011161-1|BAA25515.1|  687|Homo sapiens KIAA0589 protein protein.     31   3.4  
Y17397-1|CAA76763.1| 1690|Homo sapiens collagen alpha 4 type IV ...    30   7.9  
X81053-1|CAA56943.1| 1690|Homo sapiens type IV collagen alpha 4 ...    30   7.9  
D17391-1|BAA04214.1|  472|Homo sapiens alpha 4(IV) collagen prot...    30   7.9  
AC073149-2|AAY24061.1|  365|Homo sapiens unknown protein.              30   7.9  

>AC004637-1|AAC15471.1|  156|Homo sapiens KIAA0589 protein.
          Length = 156

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 488 AAHSPFAAGVIAKRPAPDRPFQQLAQPGLGNGQ 586
           AA S  AAG+  K+ AP       AQPG G+G+
Sbjct: 24  AAESGAAAGLAQKKAAPTEVLSMTAQPGPGHGK 56


>AB011161-1|BAA25515.1|  687|Homo sapiens KIAA0589 protein protein.
          Length = 687

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 488 AAHSPFAAGVIAKRPAPDRPFQQLAQPGLGNGQ 586
           AA S  AAG+  K+ AP       AQPG G+G+
Sbjct: 43  AAESGAAAGLAQKKAAPTEVLSMTAQPGPGHGK 75


>Y17397-1|CAA76763.1| 1690|Homo sapiens collagen alpha 4 type IV
            protein.
          Length = 1690

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -1

Query: 204  PPGVRGLPEPIGIYVNYVTHLETRVLSQFNSTTTTPAGLDRGWSG 70
            PPG  G P P G    Y+      + SQ +   T P G+ R W+G
Sbjct: 1446 PPGPIGDPGPKGFGPGYLGGFLLVLHSQTDQEPTCPLGMPRLWTG 1490


>X81053-1|CAA56943.1| 1690|Homo sapiens type IV collagen alpha 4 chain
            protein.
          Length = 1690

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -1

Query: 204  PPGVRGLPEPIGIYVNYVTHLETRVLSQFNSTTTTPAGLDRGWSG 70
            PPG  G P P G    Y+      + SQ +   T P G+ R W+G
Sbjct: 1446 PPGPIGDPGPKGFGPGYLGGFLLVLHSQTDQEPTCPLGMPRLWTG 1490


>D17391-1|BAA04214.1|  472|Homo sapiens alpha 4(IV) collagen
           protein.
          Length = 472

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -1

Query: 204 PPGVRGLPEPIGIYVNYVTHLETRVLSQFNSTTTTPAGLDRGWSG 70
           PPG  G P P G    Y+      + SQ +   T P G+ R W+G
Sbjct: 228 PPGPIGDPGPKGFGPGYLGGFLLVLHSQTDQEPTCPLGMPRLWTG 272


>AC073149-2|AAY24061.1|  365|Homo sapiens unknown protein.
          Length = 365

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -1

Query: 204 PPGVRGLPEPIGIYVNYVTHLETRVLSQFNSTTTTPAGLDRGWSG 70
           PPG  G P P G    Y+      + SQ +   T P G+ R W+G
Sbjct: 121 PPGPIGDPGPKGFGPGYLGGFLLVLHSQTDQEPTCPLGMPRLWTG 165


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,350,954
Number of Sequences: 237096
Number of extensions: 2626069
Number of successful extensions: 12671
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12671
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)