Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0077
         (669 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC012745-1|AAH12745.1| 1297|Homo sapiens ribosomal RNA processin...    49   1e-05
BC002621-1|AAH02621.3|  203|Homo sapiens RRP12 protein protein.        49   1e-05
AL355490-8|CAI40776.1| 1197|Homo sapiens KIAA0690 protein.             49   1e-05
AL355490-7|CAI40777.1| 1297|Homo sapiens KIAA0690 protein.             49   1e-05
AB014590-1|BAA31665.1| 1214|Homo sapiens KIAA0690 protein protein.     49   1e-05

>BC012745-1|AAH12745.1| 1297|Homo sapiens ribosomal RNA processing 12
            homolog (S. cerevisiae) protein.
          Length = 1297

 Score = 49.2 bits (112), Expect = 1e-05
 Identities = 22/54 (40%), Positives = 32/54 (59%)
 Frame = -1

Query: 246  GGDYRPXXXXXXXXXXXKHDPYAYLPLSRTNLNKRKKSVNSKQFKGIVKSKTKG 85
            G +Y+            + DPYAY+PL+R+ LN+RKK     QFKG+VK+  +G
Sbjct: 1230 GAEYKAKKAKGDVKKKGRPDPYAYIPLNRSKLNRRKKMKLQGQFKGLVKAARRG 1283


>BC002621-1|AAH02621.3|  203|Homo sapiens RRP12 protein protein.
          Length = 203

 Score = 49.2 bits (112), Expect = 1e-05
 Identities = 22/54 (40%), Positives = 32/54 (59%)
 Frame = -1

Query: 246 GGDYRPXXXXXXXXXXXKHDPYAYLPLSRTNLNKRKKSVNSKQFKGIVKSKTKG 85
           G +Y+            + DPYAY+PL+R+ LN+RKK     QFKG+VK+  +G
Sbjct: 136 GAEYKAKKAKGDVKKKGRPDPYAYIPLNRSKLNRRKKMKLQGQFKGLVKAAQRG 189


>AL355490-8|CAI40776.1| 1197|Homo sapiens KIAA0690 protein.
          Length = 1197

 Score = 49.2 bits (112), Expect = 1e-05
 Identities = 22/54 (40%), Positives = 32/54 (59%)
 Frame = -1

Query: 246  GGDYRPXXXXXXXXXXXKHDPYAYLPLSRTNLNKRKKSVNSKQFKGIVKSKTKG 85
            G +Y+            + DPYAY+PL+R+ LN+RKK     QFKG+VK+  +G
Sbjct: 1130 GAEYKAKKAKGDVKKKGRPDPYAYIPLNRSKLNRRKKMKLQGQFKGLVKAARRG 1183


>AL355490-7|CAI40777.1| 1297|Homo sapiens KIAA0690 protein.
          Length = 1297

 Score = 49.2 bits (112), Expect = 1e-05
 Identities = 22/54 (40%), Positives = 32/54 (59%)
 Frame = -1

Query: 246  GGDYRPXXXXXXXXXXXKHDPYAYLPLSRTNLNKRKKSVNSKQFKGIVKSKTKG 85
            G +Y+            + DPYAY+PL+R+ LN+RKK     QFKG+VK+  +G
Sbjct: 1230 GAEYKAKKAKGDVKKKGRPDPYAYIPLNRSKLNRRKKMKLQGQFKGLVKAARRG 1283


>AB014590-1|BAA31665.1| 1214|Homo sapiens KIAA0690 protein protein.
          Length = 1214

 Score = 49.2 bits (112), Expect = 1e-05
 Identities = 22/54 (40%), Positives = 32/54 (59%)
 Frame = -1

Query: 246  GGDYRPXXXXXXXXXXXKHDPYAYLPLSRTNLNKRKKSVNSKQFKGIVKSKTKG 85
            G +Y+            + DPYAY+PL+R+ LN+RKK     QFKG+VK+  +G
Sbjct: 1147 GAEYKAKKAKGDVKKKGRPDPYAYIPLNRSKLNRRKKMKLQGQFKGLVKAARRG 1200


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,810,051
Number of Sequences: 237096
Number of extensions: 1257282
Number of successful extensions: 3355
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3355
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)