Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0033
         (681 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY642117-1|AAT74401.1|   84|Homo sapiens DADS2 protein.                32   2.2  
EF212154-1|ABN05230.1|  373|Homo sapiens cellular titin isoform ...    30   8.8  
AB209509-1|BAD92746.1|  292|Homo sapiens insulin-like growth fac...    30   8.8  

>AY642117-1|AAT74401.1|   84|Homo sapiens DADS2 protein.
          Length = 84

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +1

Query: 310 CCGCCPYTARC 342
           CCGCCPYT+ C
Sbjct: 72  CCGCCPYTSGC 82


>EF212154-1|ABN05230.1|  373|Homo sapiens cellular titin isoform
           PEVK variant 2 protein.
          Length = 373

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
 Frame = -2

Query: 242 PREQHAPMEQPGVAIASERDVQRA*PAVR------VPAIRVPTIHVRHTRAPDKEPQTP 84
           P E+ AP E+  V +A E + +   PAV       +P  +VP I  +    P KEP+ P
Sbjct: 85  PEEEIAPEEEKPVPVAEEEEPEVPPPAVPEEPKKIIPEKKVPVIK-KPEAPPPKEPEMP 142


>AB209509-1|BAD92746.1|  292|Homo sapiens insulin-like growth factor
           binding protein 2 variant protein.
          Length = 292

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 307 SCCGCCPYTARCETDCCACYT 369
           S CGCC   AR E + C  YT
Sbjct: 116 SGCGCCSVCARLEGEACGVYT 136


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,434,174
Number of Sequences: 237096
Number of extensions: 1128035
Number of successful extensions: 3348
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3327
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)