Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0026
         (692 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK222932-1|BAD96652.1|  462|Homo sapiens amino acid transporter ...    33   0.97 
U96750-1|AAD03164.1|  229|Homo sapiens NOEY2 protein.                  33   1.3  
CR541892-1|CAG46690.1|  229|Homo sapiens ARHI protein.                 33   1.3  
CR541870-1|CAG46668.1|  229|Homo sapiens ARHI protein.                 33   1.3  
BC005362-1|AAH05362.1|  229|Homo sapiens DIRAS family, GTP-bindi...    33   1.3  
AL157407-2|CAI21991.1|  229|Homo sapiens DIRAS family, GTP-bindi...    33   1.3  
AF202543-1|AAG35625.1|  229|Homo sapiens small GTP-binding tumor...    33   1.3  
CR457236-1|CAG33517.1|  462|Homo sapiens FLJ10815 protein.             31   3.0  
BC001961-1|AAH01961.1|  462|Homo sapiens amino acid transporter ...    31   3.0  
AK022786-1|BAB14244.1|  344|Homo sapiens protein ( Homo sapiens ...    31   3.0  
AK001677-1|BAA91830.1|  462|Homo sapiens protein ( Homo sapiens ...    31   3.0  

>AK222932-1|BAD96652.1|  462|Homo sapiens amino acid transporter
           variant protein.
          Length = 462

 Score = 33.1 bits (72), Expect = 0.97
 Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +2

Query: 98  FQADFDLISALGTWHVVAIIPEK-LFPDKDVT 190
           FQ     +SA+GTW+V AI+  K ++PDK++T
Sbjct: 199 FQKYASFLSAVGTWYVTAIVIIKYIWPDKEMT 230


>U96750-1|AAD03164.1|  229|Homo sapiens NOEY2 protein.
          Length = 229

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 443 MMQLHIVDSK--DGSSPFLMQMLWGKLISVVVYRRNQGITEEQLKPIFELATKIRG 604
           ++ LHI DSK  DG+      ++      V+VY   +  T E+LK  +EL  KI+G
Sbjct: 84  VLSLHITDSKSGDGNRALQRHVIARGHAFVLVYSVTKKETLEELKAFYELICKIKG 139


>CR541892-1|CAG46690.1|  229|Homo sapiens ARHI protein.
          Length = 229

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 443 MMQLHIVDSK--DGSSPFLMQMLWGKLISVVVYRRNQGITEEQLKPIFELATKIRG 604
           ++ LHI DSK  DG+      ++      V+VY   +  T E+LK  +EL  KI+G
Sbjct: 84  VLSLHITDSKSGDGNRALQRHVIARGHAFVLVYSVTKKETLEELKAFYELICKIKG 139


>CR541870-1|CAG46668.1|  229|Homo sapiens ARHI protein.
          Length = 229

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 443 MMQLHIVDSK--DGSSPFLMQMLWGKLISVVVYRRNQGITEEQLKPIFELATKIRG 604
           ++ LHI DSK  DG+      ++      V+VY   +  T E+LK  +EL  KI+G
Sbjct: 84  VLSLHITDSKSGDGNRALQRHVIARGHAFVLVYSVTKKETLEELKAFYELICKIKG 139


>BC005362-1|AAH05362.1|  229|Homo sapiens DIRAS family, GTP-binding
           RAS-like 3 protein.
          Length = 229

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 443 MMQLHIVDSK--DGSSPFLMQMLWGKLISVVVYRRNQGITEEQLKPIFELATKIRG 604
           ++ LHI DSK  DG+      ++      V+VY   +  T E+LK  +EL  KI+G
Sbjct: 84  VLSLHITDSKSGDGNRALQRHVIARGHAFVLVYSVTKKETLEELKAFYELICKIKG 139


>AL157407-2|CAI21991.1|  229|Homo sapiens DIRAS family, GTP-binding
           RAS-like 3 protein.
          Length = 229

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 443 MMQLHIVDSK--DGSSPFLMQMLWGKLISVVVYRRNQGITEEQLKPIFELATKIRG 604
           ++ LHI DSK  DG+      ++      V+VY   +  T E+LK  +EL  KI+G
Sbjct: 84  VLSLHITDSKSGDGNRALQRHVIARGHAFVLVYSVTKKETLEELKAFYELICKIKG 139


>AF202543-1|AAG35625.1|  229|Homo sapiens small GTP-binding tumor
           suppressor protein.
          Length = 229

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 443 MMQLHIVDSK--DGSSPFLMQMLWGKLISVVVYRRNQGITEEQLKPIFELATKIRG 604
           ++ LHI DSK  DG+      ++      V+VY   +  T E+LK  +EL  KI+G
Sbjct: 84  VLSLHITDSKSGDGNRALQRHVIARGHAFVLVYSVTKKETLEELKAFYELICKIKG 139


>CR457236-1|CAG33517.1|  462|Homo sapiens FLJ10815 protein.
          Length = 462

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +2

Query: 98  FQADFDLISALGTWHVVAIIPEK-LFPDKDVT 190
           FQ     +S +GTW+V AI+  K ++PDK++T
Sbjct: 199 FQKYASFLSVVGTWYVTAIVIIKYIWPDKEMT 230


>BC001961-1|AAH01961.1|  462|Homo sapiens amino acid transporter
           protein.
          Length = 462

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +2

Query: 98  FQADFDLISALGTWHVVAIIPEK-LFPDKDVT 190
           FQ     +S +GTW+V AI+  K ++PDK++T
Sbjct: 199 FQKYASFLSVVGTWYVTAIVIIKYIWPDKEMT 230


>AK022786-1|BAB14244.1|  344|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12724 fis, clone NT2RP1001385, weakly similar to
           HYPOTHETICAL 48.8 KD PROTEIN IN SSU81-SCS2 INTERGENIC
           REGION. ).
          Length = 344

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +2

Query: 98  FQADFDLISALGTWHVVAIIPEK-LFPDKDVT 190
           FQ     +S +GTW+V AI+  K ++PDK++T
Sbjct: 199 FQKYASFLSVVGTWYVTAIVIIKYIWPDKEMT 230


>AK001677-1|BAA91830.1|  462|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10815 fis, clone NT2RP4000989, weakly similar to
           UNC-47 PROTEIN. ).
          Length = 462

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +2

Query: 98  FQADFDLISALGTWHVVAIIPEK-LFPDKDVT 190
           FQ     +S +GTW+V AI+  K ++PDK++T
Sbjct: 199 FQKYASFLSVVGTWYVTAIVIIKYIWPDKEMT 230


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,833,435
Number of Sequences: 237096
Number of extensions: 2180757
Number of successful extensions: 3991
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3985
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)