Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0019
         (724 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X81625-1|CAA57281.1|  437|Homo sapiens C11 protein protein.           244   3e-64
U90176-1|AAB49726.1|  437|Homo sapiens eukaryotic release factor...   244   3e-64
BC088358-1|AAH88358.1|  437|Homo sapiens eukaryotic translation ...   244   3e-64
AF095901-1|AAD43966.1|  437|Homo sapiens eRF1 protein.                244   3e-64
M75715-1|AAA36665.1|  428|Homo sapiens TB3-1 protein.                 241   1e-63
BT007374-1|AAP36038.1|  404|Homo sapiens eukaryotic translation ...   191   2e-48
BC014269-1|AAH14269.1|  404|Homo sapiens ETF1 protein protein.        191   2e-48

>X81625-1|CAA57281.1|  437|Homo sapiens C11 protein protein.
          Length = 437

 Score =  244 bits (597), Expect = 3e-64
 Identities = 117/125 (93%), Positives = 121/125 (96%)
 Frame = +2

Query: 350 EESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIK 529
           + S+ADRNVEIWKIKKLIKSLE ARGNGTSMISLIIPPKDQISRV+KMLADEFGTASNIK
Sbjct: 4   DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIK 63

Query: 530 SRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTS 709
           SRVNRLSVLGAITSVQ RLKLY KVPPNGLV+YCGTIVTEEGKEKKVNIDFEPFKPINTS
Sbjct: 64  SRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTS 123

Query: 710 LYLCD 724
           LYLCD
Sbjct: 124 LYLCD 128


>U90176-1|AAB49726.1|  437|Homo sapiens eukaryotic release factor 1
           protein.
          Length = 437

 Score =  244 bits (597), Expect = 3e-64
 Identities = 117/125 (93%), Positives = 121/125 (96%)
 Frame = +2

Query: 350 EESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIK 529
           + S+ADRNVEIWKIKKLIKSLE ARGNGTSMISLIIPPKDQISRV+KMLADEFGTASNIK
Sbjct: 4   DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIK 63

Query: 530 SRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTS 709
           SRVNRLSVLGAITSVQ RLKLY KVPPNGLV+YCGTIVTEEGKEKKVNIDFEPFKPINTS
Sbjct: 64  SRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTS 123

Query: 710 LYLCD 724
           LYLCD
Sbjct: 124 LYLCD 128


>BC088358-1|AAH88358.1|  437|Homo sapiens eukaryotic translation
           termination factor 1 protein.
          Length = 437

 Score =  244 bits (597), Expect = 3e-64
 Identities = 117/125 (93%), Positives = 121/125 (96%)
 Frame = +2

Query: 350 EESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIK 529
           + S+ADRNVEIWKIKKLIKSLE ARGNGTSMISLIIPPKDQISRV+KMLADEFGTASNIK
Sbjct: 4   DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIK 63

Query: 530 SRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTS 709
           SRVNRLSVLGAITSVQ RLKLY KVPPNGLV+YCGTIVTEEGKEKKVNIDFEPFKPINTS
Sbjct: 64  SRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTS 123

Query: 710 LYLCD 724
           LYLCD
Sbjct: 124 LYLCD 128


>AF095901-1|AAD43966.1|  437|Homo sapiens eRF1 protein.
          Length = 437

 Score =  244 bits (597), Expect = 3e-64
 Identities = 117/125 (93%), Positives = 121/125 (96%)
 Frame = +2

Query: 350 EESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIK 529
           + S+ADRNVEIWKIKKLIKSLE ARGNGTSMISLIIPPKDQISRV+KMLADEFGTASNIK
Sbjct: 4   DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIK 63

Query: 530 SRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTS 709
           SRVNRLSVLGAITSVQ RLKLY KVPPNGLV+YCGTIVTEEGKEKKVNIDFEPFKPINTS
Sbjct: 64  SRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTS 123

Query: 710 LYLCD 724
           LYLCD
Sbjct: 124 LYLCD 128


>M75715-1|AAA36665.1|  428|Homo sapiens TB3-1 protein.
          Length = 428

 Score =  241 bits (591), Expect = 1e-63
 Identities = 116/125 (92%), Positives = 120/125 (96%)
 Frame = +2

Query: 350 EESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIK 529
           + S+ADRNVEIWKIKKLIKSLE ARGNGTSMISLIIPPKDQISRV+KMLADEFGTASNIK
Sbjct: 4   DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIK 63

Query: 530 SRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTS 709
           SRVNRLSVLGAITSVQ RLKLY KVPPNGL +YCGTIVTEEGKEKKVNIDFEPFKPINTS
Sbjct: 64  SRVNRLSVLGAITSVQQRLKLYNKVPPNGLEVYCGTIVTEEGKEKKVNIDFEPFKPINTS 123

Query: 710 LYLCD 724
           LYLCD
Sbjct: 124 LYLCD 128


>BT007374-1|AAP36038.1|  404|Homo sapiens eukaryotic translation
           termination factor 1 protein.
          Length = 404

 Score =  191 bits (466), Expect = 2e-48
 Identities = 91/95 (95%), Positives = 93/95 (97%)
 Frame = +2

Query: 440 MISLIIPPKDQISRVSKMLADEFGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNGL 619
           MISLIIPPKDQISRV+KMLADEFGTASNIKSRVNRLSVLGAITSVQ RLKLY KVPPNGL
Sbjct: 1   MISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGL 60

Query: 620 VIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCD 724
           V+YCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCD
Sbjct: 61  VVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCD 95


>BC014269-1|AAH14269.1|  404|Homo sapiens ETF1 protein protein.
          Length = 404

 Score =  191 bits (466), Expect = 2e-48
 Identities = 91/95 (95%), Positives = 93/95 (97%)
 Frame = +2

Query: 440 MISLIIPPKDQISRVSKMLADEFGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNGL 619
           MISLIIPPKDQISRV+KMLADEFGTASNIKSRVNRLSVLGAITSVQ RLKLY KVPPNGL
Sbjct: 1   MISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGL 60

Query: 620 VIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCD 724
           V+YCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCD
Sbjct: 61  VVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCD 95


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,999,136
Number of Sequences: 237096
Number of extensions: 2068961
Number of successful extensions: 6871
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6871
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)