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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0036
         (627 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z25749-1|CAA81022.1|  194|Homo sapiens ribosomal protein S7 prot...   263   4e-70
M77233-1|AAB00969.1|  192|Homo sapiens ribosomal protein protein.     263   4e-70
BC071919-1|AAH71919.1|  194|Homo sapiens ribosomal protein S7 pr...   263   4e-70
BC061901-1|AAH61901.1|  194|Homo sapiens ribosomal protein S7 pr...   263   4e-70
BC002866-1|AAH02866.1|  194|Homo sapiens ribosomal protein S7 pr...   263   4e-70
AC108488-2|AAX82027.1|  194|Homo sapiens unknown protein.             263   4e-70
AB209386-1|BAD92623.1|   78|Homo sapiens ribosomal protein S7 va...    92   2e-18
BC073744-1|AAH73744.1|  648|Homo sapiens ITSN1 protein protein.        32   1.9  
X13482-1|CAA31838.1|  255|Homo sapiens protein ( Human mRNA for ...    31   2.5  
BC071717-1|AAH71717.1|  255|Homo sapiens small nuclear ribonucle...    31   2.5  
BC022816-1|AAH22816.1|  255|Homo sapiens small nuclear ribonucle...    31   2.5  
AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sortin...    31   2.5  
AL359204-1|CAI39537.1| 3095|Homo sapiens vacuolar protein sortin...    31   2.5  
AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sortin...    31   2.5  
AL353710-1|CAH74105.1| 3095|Homo sapiens vacuolar protein sortin...    31   2.5  
AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sortin...    31   2.5  
AL158159-1|CAI40935.1| 3095|Homo sapiens vacuolar protein sortin...    31   2.5  
AK223070-1|BAD96790.1|  255|Homo sapiens small nuclear ribonucle...    31   2.5  
AJ626859-1|CAF25186.1| 3069|Homo sapiens chorein 1D protein.           31   2.5  
AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein.           31   2.5  
AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis p...    31   2.5  
AB054005-1|BAB59128.1| 3095|Homo sapiens chorein protein.              31   2.5  
BC044808-1|AAH44808.1|  440|Homo sapiens C14orf45 protein protein.     31   4.4  
AL078621-9|CAB81646.1|  255|Homo sapiens protein ( G islands.  ).).    31   4.4  
DQ679757-1|ABG74698.1| 1215|Homo sapiens intersectin 1 short for...    30   5.8  
DQ679756-1|ABG74697.1| 1178|Homo sapiens intersectin 1 short for...    30   5.8  
DQ679755-1|ABG74696.1| 1149|Homo sapiens intersectin 1 short for...    30   5.8  
DQ679754-1|ABG74695.1| 1144|Homo sapiens intersectin 1 short for...    30   5.8  
DQ386455-1|ABD72328.1| 1020|Homo sapiens intersectin 1 short for...    30   5.8  
DQ340865-1|ABC69037.1| 1076|Homo sapiens intersectin 1 short for...    30   5.8  
BX538175-1|CAD98050.1|  627|Homo sapiens hypothetical protein pr...    30   5.8  
BC117560-1|AAI17561.1| 1144|Homo sapiens ITSN1 protein protein.        30   5.8  
BC116186-1|AAI16187.1| 1721|Homo sapiens intersectin 1 (SH3 doma...    30   5.8  
BC116185-1|AAI16186.1| 1716|Homo sapiens ITSN1 protein protein.        30   5.8  
AK223110-1|BAD96830.1|  255|Homo sapiens small nuclear ribonucle...    30   5.8  
AF114488-1|AAD29953.1| 1220|Homo sapiens intersectin short isofo...    30   5.8  
AF114487-1|AAD29952.1| 1721|Homo sapiens intersectin long isofor...    30   5.8  
AF064244-1|AAC78611.1| 1721|Homo sapiens intersectin long form p...    30   5.8  
AF064243-1|AAC78610.1| 1220|Homo sapiens intersectin short form ...    30   5.8  

>Z25749-1|CAA81022.1|  194|Homo sapiens ribosomal protein S7
           protein.
          Length = 194

 Score =  263 bits (644), Expect = 4e-70
 Identities = 128/175 (73%), Positives = 151/175 (86%), Gaps = 1/175 (0%)
 Frame = +2

Query: 5   IIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMP 181
           I+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+   +K+III+VP+P
Sbjct: 8   IVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVP 67

Query: 182 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYD 361
           +LK+FQKIQ+RLVRELEKKFSGKHVVF+  R+ILPKP+ K+R  NKQKRPRSRTLT+V+D
Sbjct: 68  QLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHD 127

Query: 362 AILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKXDTXQXXYKKLTG 526
           AILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ  +EHK +T    YKKLTG
Sbjct: 128 AILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTG 182


>M77233-1|AAB00969.1|  192|Homo sapiens ribosomal protein protein.
          Length = 192

 Score =  263 bits (644), Expect = 4e-70
 Identities = 128/175 (73%), Positives = 151/175 (86%), Gaps = 1/175 (0%)
 Frame = +2

Query: 5   IIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMP 181
           I+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+   +K+III+VP+P
Sbjct: 6   IVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVP 65

Query: 182 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYD 361
           +LK+FQKIQ+RLVRELEKKFSGKHVVF+  R+ILPKP+ K+R  NKQKRPRSRTLT+V+D
Sbjct: 66  QLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHD 125

Query: 362 AILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKXDTXQXXYKKLTG 526
           AILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ  +EHK +T    YKKLTG
Sbjct: 126 AILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTG 180


>BC071919-1|AAH71919.1|  194|Homo sapiens ribosomal protein S7
           protein.
          Length = 194

 Score =  263 bits (644), Expect = 4e-70
 Identities = 128/175 (73%), Positives = 151/175 (86%), Gaps = 1/175 (0%)
 Frame = +2

Query: 5   IIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMP 181
           I+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+   +K+III+VP+P
Sbjct: 8   IVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVP 67

Query: 182 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYD 361
           +LK+FQKIQ+RLVRELEKKFSGKHVVF+  R+ILPKP+ K+R  NKQKRPRSRTLT+V+D
Sbjct: 68  QLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHD 127

Query: 362 AILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKXDTXQXXYKKLTG 526
           AILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ  +EHK +T    YKKLTG
Sbjct: 128 AILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTG 182


>BC061901-1|AAH61901.1|  194|Homo sapiens ribosomal protein S7
           protein.
          Length = 194

 Score =  263 bits (644), Expect = 4e-70
 Identities = 128/175 (73%), Positives = 151/175 (86%), Gaps = 1/175 (0%)
 Frame = +2

Query: 5   IIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMP 181
           I+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+   +K+III+VP+P
Sbjct: 8   IVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVP 67

Query: 182 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYD 361
           +LK+FQKIQ+RLVRELEKKFSGKHVVF+  R+ILPKP+ K+R  NKQKRPRSRTLT+V+D
Sbjct: 68  QLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHD 127

Query: 362 AILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKXDTXQXXYKKLTG 526
           AILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ  +EHK +T    YKKLTG
Sbjct: 128 AILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTG 182


>BC002866-1|AAH02866.1|  194|Homo sapiens ribosomal protein S7
           protein.
          Length = 194

 Score =  263 bits (644), Expect = 4e-70
 Identities = 128/175 (73%), Positives = 151/175 (86%), Gaps = 1/175 (0%)
 Frame = +2

Query: 5   IIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMP 181
           I+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+   +K+III+VP+P
Sbjct: 8   IVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVP 67

Query: 182 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYD 361
           +LK+FQKIQ+RLVRELEKKFSGKHVVF+  R+ILPKP+ K+R  NKQKRPRSRTLT+V+D
Sbjct: 68  QLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHD 127

Query: 362 AILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKXDTXQXXYKKLTG 526
           AILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ  +EHK +T    YKKLTG
Sbjct: 128 AILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTG 182


>AC108488-2|AAX82027.1|  194|Homo sapiens unknown protein.
          Length = 194

 Score =  263 bits (644), Expect = 4e-70
 Identities = 128/175 (73%), Positives = 151/175 (86%), Gaps = 1/175 (0%)
 Frame = +2

Query: 5   IIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMP 181
           I+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+   +K+III+VP+P
Sbjct: 8   IVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVP 67

Query: 182 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYD 361
           +LK+FQKIQ+RLVRELEKKFSGKHVVF+  R+ILPKP+ K+R  NKQKRPRSRTLT+V+D
Sbjct: 68  QLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHD 127

Query: 362 AILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKXDTXQXXYKKLTG 526
           AILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ  +EHK +T    YKKLTG
Sbjct: 128 AILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTG 182


>AB209386-1|BAD92623.1|   78|Homo sapiens ribosomal protein S7
           variant protein.
          Length = 78

 Score = 91.9 bits (218), Expect = 2e-18
 Identities = 43/51 (84%), Positives = 48/51 (94%)
 Frame = +2

Query: 335 SRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 487
           SRTLT+V+DAILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ  +EHK
Sbjct: 10  SRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHK 60


>BC073744-1|AAH73744.1|  648|Homo sapiens ITSN1 protein protein.
          Length = 648

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 65  VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 238
           VE ET S  K Q  +++  + KE+ E+HNK+ +     M   +  QK Q R + ELEKK
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKK 645


>X13482-1|CAA31838.1|  255|Homo sapiens protein ( Human mRNA for U2
           snRNP-specific A' protein. ).
          Length = 255

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = +2

Query: 53  SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 220
           + +LVEL  + D  A L+ L         + NKK   +YV    P  ++  FQK++++  
Sbjct: 97  NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155

Query: 221 RELEKKFSGK 250
           +E EK F GK
Sbjct: 156 QEAEKMFKGK 165


>BC071717-1|AAH71717.1|  255|Homo sapiens small nuclear
           ribonucleoprotein polypeptide A' protein.
          Length = 255

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = +2

Query: 53  SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 220
           + +LVEL  + D  A L+ L         + NKK   +YV    P  ++  FQK++++  
Sbjct: 97  NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155

Query: 221 RELEKKFSGK 250
           +E EK F GK
Sbjct: 156 QEAEKMFKGK 165


>BC022816-1|AAH22816.1|  255|Homo sapiens small nuclear
           ribonucleoprotein polypeptide A' protein.
          Length = 255

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = +2

Query: 53  SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 220
           + +LVEL  + D  A L+ L         + NKK   +YV    P  ++  FQK++++  
Sbjct: 97  NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155

Query: 221 RELEKKFSGK 250
           +E EK F GK
Sbjct: 156 QEAEKMFKGK 165


>AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sorting 13
            homolog A (S. cerevisiae) protein.
          Length = 3174

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
 Frame = +2

Query: 32   DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 193
            DSF+  ++   +      D   + R+L + T+   + +H     +K  + + V MPK K 
Sbjct: 707  DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766

Query: 194  FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 373
            + K+ +  +R  +KK  G   +     + +PKP   T V+   K  + +T TS+  + + 
Sbjct: 767  YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822

Query: 374  DLVFP 388
              + P
Sbjct: 823  QKIIP 827


>AL359204-1|CAI39537.1| 3095|Homo sapiens vacuolar protein sorting 13
            homolog A (S. cerevisiae) protein.
          Length = 3095

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
 Frame = +2

Query: 32   DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 193
            DSF+  ++   +      D   + R+L + T+   + +H     +K  + + V MPK K 
Sbjct: 707  DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766

Query: 194  FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 373
            + K+ +  +R  +KK  G   +     + +PKP   T V+   K  + +T TS+  + + 
Sbjct: 767  YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822

Query: 374  DLVFP 388
              + P
Sbjct: 823  QKIIP 827


>AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sorting 13
            homolog A (S. cerevisiae) protein.
          Length = 3174

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
 Frame = +2

Query: 32   DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 193
            DSF+  ++   +      D   + R+L + T+   + +H     +K  + + V MPK K 
Sbjct: 707  DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766

Query: 194  FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 373
            + K+ +  +R  +KK  G   +     + +PKP   T V+   K  + +T TS+  + + 
Sbjct: 767  YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822

Query: 374  DLVFP 388
              + P
Sbjct: 823  QKIIP 827


>AL353710-1|CAH74105.1| 3095|Homo sapiens vacuolar protein sorting 13
            homolog A (S. cerevisiae) protein.
          Length = 3095

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
 Frame = +2

Query: 32   DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 193
            DSF+  ++   +      D   + R+L + T+   + +H     +K  + + V MPK K 
Sbjct: 707  DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766

Query: 194  FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 373
            + K+ +  +R  +KK  G   +     + +PKP   T V+   K  + +T TS+  + + 
Sbjct: 767  YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822

Query: 374  DLVFP 388
              + P
Sbjct: 823  QKIIP 827


>AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sorting 13
            homolog A (S. cerevisiae) protein.
          Length = 3174

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
 Frame = +2

Query: 32   DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 193
            DSF+  ++   +      D   + R+L + T+   + +H     +K  + + V MPK K 
Sbjct: 707  DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766

Query: 194  FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 373
            + K+ +  +R  +KK  G   +     + +PKP   T V+   K  + +T TS+  + + 
Sbjct: 767  YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822

Query: 374  DLVFP 388
              + P
Sbjct: 823  QKIIP 827


>AL158159-1|CAI40935.1| 3095|Homo sapiens vacuolar protein sorting 13
            homolog A (S. cerevisiae) protein.
          Length = 3095

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
 Frame = +2

Query: 32   DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 193
            DSF+  ++   +      D   + R+L + T+   + +H     +K  + + V MPK K 
Sbjct: 707  DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766

Query: 194  FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 373
            + K+ +  +R  +KK  G   +     + +PKP   T V+   K  + +T TS+  + + 
Sbjct: 767  YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822

Query: 374  DLVFP 388
              + P
Sbjct: 823  QKIIP 827


>AK223070-1|BAD96790.1|  255|Homo sapiens small nuclear
           ribonucleoprotein polypeptide A' variant protein.
          Length = 255

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = +2

Query: 53  SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 220
           + +LVEL  + D  A L+ L         + NKK   +YV    P  ++  FQK++++  
Sbjct: 97  NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155

Query: 221 RELEKKFSGK 250
           +E EK F GK
Sbjct: 156 QEAEKMFKGK 165


>AJ626859-1|CAF25186.1| 3069|Homo sapiens chorein 1D protein.
          Length = 3069

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
 Frame = +2

Query: 32   DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 193
            DSF+  ++   +      D   + R+L + T+   + +H     +K  + + V MPK K 
Sbjct: 707  DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766

Query: 194  FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 373
            + K+ +  +R  +KK  G   +     + +PKP   T V+   K  + +T TS+  + + 
Sbjct: 767  YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822

Query: 374  DLVFP 388
              + P
Sbjct: 823  QKIIP 827


>AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein.
          Length = 3135

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
 Frame = +2

Query: 32   DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 193
            DSF+  ++   +      D   + R+L + T+   + +H     +K  + + V MPK K 
Sbjct: 707  DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766

Query: 194  FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 373
            + K+ +  +R  +KK  G   +     + +PKP   T V+   K  + +T TS+  + + 
Sbjct: 767  YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822

Query: 374  DLVFP 388
              + P
Sbjct: 823  QKIIP 827


>AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis
            protein.
          Length = 3174

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
 Frame = +2

Query: 32   DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 193
            DSF+  ++   +      D   + R+L + T+   + +H     +K  + + V MPK K 
Sbjct: 707  DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766

Query: 194  FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 373
            + K+ +  +R  +KK  G   +     + +PKP   T V+   K  + +T TS+  + + 
Sbjct: 767  YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822

Query: 374  DLVFP 388
              + P
Sbjct: 823  QKIIP 827


>AB054005-1|BAB59128.1| 3095|Homo sapiens chorein protein.
          Length = 3095

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
 Frame = +2

Query: 32   DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 193
            DSF+  ++   +      D   + R+L + T+   + +H     +K  + + V MPK K 
Sbjct: 707  DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766

Query: 194  FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 373
            + K+ +  +R  +KK  G   +     + +PKP   T V+   K  + +T TS+  + + 
Sbjct: 767  YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822

Query: 374  DLVFP 388
              + P
Sbjct: 823  QKIIP 827


>BC044808-1|AAH44808.1|  440|Homo sapiens C14orf45 protein protein.
          Length = 440

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
 Frame = +2

Query: 8   IKASGAEADSFETSISQALVEL-ETNSDLKAQLRELYITKAKEIE--LHNK-KSI-IIYV 172
           +K    E D+    + Q L E  E   + K +L + Y  +  E+E   H K K I +I+ 
Sbjct: 85  LKKQDQEKDNMIEKLKQQLNETKEKAQEEKDKLEQKYTRQINELEGQFHQKAKEIGMIHT 144

Query: 173 PMPKLKAFQKIQIRLVRELE 232
            +  ++ FQK +I++ REL+
Sbjct: 145 ELKAVRQFQKRKIQVERELD 164


>AL078621-9|CAB81646.1|  255|Homo sapiens protein ( G islands.  ).).
          Length = 255

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
 Frame = +2

Query: 62  LVELETNSDLKAQLREL-YITKAKEIELHNK--KSIIIY-VPMPKLKAFQKIQIRLVREL 229
           LVEL  + D  A L+ L Y++  + +  + K  +  +IY VP  ++  FQK++++  +E 
Sbjct: 100 LVELG-DLDPLASLKSLTYLSILRNLVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEA 158

Query: 230 EKKFSGK 250
           EK F GK
Sbjct: 159 EKMFKGK 165


>DQ679757-1|ABG74698.1| 1215|Homo sapiens intersectin 1 short form
           variant 5 protein.
          Length = 1215

 Score = 30.3 bits (65), Expect = 5.8
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 65  VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 238
           VE ET S  K Q  +++  + KE+ E+HNK+ +     M   +  QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645


>DQ679756-1|ABG74697.1| 1178|Homo sapiens intersectin 1 short form
           variant 2 protein.
          Length = 1178

 Score = 30.3 bits (65), Expect = 5.8
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 65  VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 238
           VE ET S  K Q  +++  + KE+ E+HNK+ +     M   +  QK Q R + ELEK+
Sbjct: 552 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 608


>DQ679755-1|ABG74696.1| 1149|Homo sapiens intersectin 1 short form
           variant 7 protein.
          Length = 1149

 Score = 30.3 bits (65), Expect = 5.8
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 65  VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 238
           VE ET S  K Q  +++  + KE+ E+HNK+ +     M   +  QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645


>DQ679754-1|ABG74695.1| 1144|Homo sapiens intersectin 1 short form
           variant 6 protein.
          Length = 1144

 Score = 30.3 bits (65), Expect = 5.8
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 65  VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 238
           VE ET S  K Q  +++  + KE+ E+HNK+ +     M   +  QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645


>DQ386455-1|ABD72328.1| 1020|Homo sapiens intersectin 1 short form
           transcript variant 8 protein.
          Length = 1020

 Score = 30.3 bits (65), Expect = 5.8
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 65  VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 238
           VE ET S  K Q  +++  + KE+ E+HNK+ +     M   +  QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645


>DQ340865-1|ABC69037.1| 1076|Homo sapiens intersectin 1 short form
           protein.
          Length = 1076

 Score = 30.3 bits (65), Expect = 5.8
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 65  VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 238
           VE ET S  K Q  +++  + KE+ E+HNK+ +     M   +  QK Q R + ELEK+
Sbjct: 587 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 643


>BX538175-1|CAD98050.1|  627|Homo sapiens hypothetical protein
           protein.
          Length = 627

 Score = 30.3 bits (65), Expect = 5.8
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 65  VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 238
           VE ET S  K Q  +++  + KE+ E+HNK+ +     M   +  QK Q R + ELEK+
Sbjct: 444 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 500


>BC117560-1|AAI17561.1| 1144|Homo sapiens ITSN1 protein protein.
          Length = 1144

 Score = 30.3 bits (65), Expect = 5.8
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 65  VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 238
           VE ET S  K Q  +++  + KE+ E+HNK+ +     M   +  QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645


>BC116186-1|AAI16187.1| 1721|Homo sapiens intersectin 1 (SH3 domain
           protein) protein.
          Length = 1721

 Score = 30.3 bits (65), Expect = 5.8
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 65  VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 238
           VE ET S  K Q  +++  + KE+ E+HNK+ +     M   +  QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645


>BC116185-1|AAI16186.1| 1716|Homo sapiens ITSN1 protein protein.
          Length = 1716

 Score = 30.3 bits (65), Expect = 5.8
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 65  VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 238
           VE ET S  K Q  +++  + KE+ E+HNK+ +     M   +  QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645


>AK223110-1|BAD96830.1|  255|Homo sapiens small nuclear
           ribonucleoprotein polypeptide A' variant protein.
          Length = 255

 Score = 30.3 bits (65), Expect = 5.8
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = +2

Query: 53  SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 220
           + +LVEL  + D  A L+ L         + NKK   +YV    P  ++  FQ+++++  
Sbjct: 97  NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQRVKLKER 155

Query: 221 RELEKKFSGK 250
           +E EK F GK
Sbjct: 156 QEAEKMFKGK 165


>AF114488-1|AAD29953.1| 1220|Homo sapiens intersectin short isoform
           protein.
          Length = 1220

 Score = 30.3 bits (65), Expect = 5.8
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 65  VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 238
           VE ET S  K Q  +++  + KE+ E+HNK+ +     M   +  QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645


>AF114487-1|AAD29952.1| 1721|Homo sapiens intersectin long isoform
           protein.
          Length = 1721

 Score = 30.3 bits (65), Expect = 5.8
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 65  VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 238
           VE ET S  K Q  +++  + KE+ E+HNK+ +     M   +  QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645


>AF064244-1|AAC78611.1| 1721|Homo sapiens intersectin long form
           protein.
          Length = 1721

 Score = 30.3 bits (65), Expect = 5.8
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 65  VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 238
           VE ET S  K Q  +++  + KE+ E+HNK+ +     M   +  QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645


>AF064243-1|AAC78610.1| 1220|Homo sapiens intersectin short form
           protein.
          Length = 1220

 Score = 30.3 bits (65), Expect = 5.8
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 65  VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 238
           VE ET S  K Q  +++  + KE+ E+HNK+ +     M   +  QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,336,876
Number of Sequences: 237096
Number of extensions: 1537713
Number of successful extensions: 2976
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 2888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2969
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6804036910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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