Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10a21
(795 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X84002-1|CAA58826.1| 161|Homo sapiens PolII transcription facto... 175 2e-43
U57693-1|AAC50600.1| 161|Homo sapiens TAF20 protein. 175 2e-43
D50544-1|BAA09112.1| 161|Homo sapiens TFIID subunit p22 protein. 175 2e-43
BT007031-1|AAP35678.1| 161|Homo sapiens TAF12 RNA polymerase II... 175 2e-43
BC011986-1|AAH11986.1| 161|Homo sapiens TAF12 protein protein. 175 2e-43
AY206865-1|AAO13491.1| 161|Homo sapiens TAF12 RNA polymerase II... 175 2e-43
AL513497-6|CAI22291.1| 161|Homo sapiens TAF12 RNA polymerase II... 175 2e-43
U57693-2|AAC50601.1| 131|Homo sapiens TAF15 protein. 172 1e-42
BC051824-1|AAH51824.1| 1122|Homo sapiens histone deacetylase 5 p... 35 0.39
AF132608-1|AAD29047.1| 1122|Homo sapiens histone deacetylase 5 p... 35 0.39
AB011172-1|BAA25526.2| 1080|Homo sapiens KIAA0600 protein protein. 35 0.39
AY771619-1|AAX14814.1| 1446|Homo sapiens olfactorin long isoform... 33 0.90
AB051810-1|BAD23798.1| 1374|Homo sapiens Uromodulin-like protein... 33 0.90
>X84002-1|CAA58826.1| 161|Homo sapiens PolII transcription factor
TFTIID protein.
Length = 161
Score = 175 bits (426), Expect = 2e-43
Identities = 83/146 (56%), Positives = 114/146 (78%), Gaps = 8/146 (5%)
Frame = +2
Query: 251 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELVREVDPTVQ 406
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+LVREVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 407 LDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGNDE 586
LDE+VEEMLLQ+ADDFI++ + +AC LA+HR + +E++DVQLHLERQWNMWIPGFG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 587 LRPYKRAAVTEAHRQRMALIRKSIKK 664
+RPYK+A TEAH+QRMALIRK+ KK
Sbjct: 136 IRPYKKACTTEAHKQRMALIRKTTKK 161
>U57693-1|AAC50600.1| 161|Homo sapiens TAF20 protein.
Length = 161
Score = 175 bits (426), Expect = 2e-43
Identities = 83/146 (56%), Positives = 114/146 (78%), Gaps = 8/146 (5%)
Frame = +2
Query: 251 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELVREVDPTVQ 406
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+LVREVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 407 LDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGNDE 586
LDE+VEEMLLQ+ADDFI++ + +AC LA+HR + +E++DVQLHLERQWNMWIPGFG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 587 LRPYKRAAVTEAHRQRMALIRKSIKK 664
+RPYK+A TEAH+QRMALIRK+ KK
Sbjct: 136 IRPYKKACTTEAHKQRMALIRKTTKK 161
>D50544-1|BAA09112.1| 161|Homo sapiens TFIID subunit p22 protein.
Length = 161
Score = 175 bits (426), Expect = 2e-43
Identities = 83/146 (56%), Positives = 114/146 (78%), Gaps = 8/146 (5%)
Frame = +2
Query: 251 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELVREVDPTVQ 406
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+LVREVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 407 LDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGNDE 586
LDE+VEEMLLQ+ADDFI++ + +AC LA+HR + +E++DVQLHLERQWNMWIPGFG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 587 LRPYKRAAVTEAHRQRMALIRKSIKK 664
+RPYK+A TEAH+QRMALIRK+ KK
Sbjct: 136 IRPYKKACTTEAHKQRMALIRKTTKK 161
>BT007031-1|AAP35678.1| 161|Homo sapiens TAF12 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 20kD
protein.
Length = 161
Score = 175 bits (426), Expect = 2e-43
Identities = 83/146 (56%), Positives = 114/146 (78%), Gaps = 8/146 (5%)
Frame = +2
Query: 251 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELVREVDPTVQ 406
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+LVREVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 407 LDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGNDE 586
LDE+VEEMLLQ+ADDFI++ + +AC LA+HR + +E++DVQLHLERQWNMWIPGFG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 587 LRPYKRAAVTEAHRQRMALIRKSIKK 664
+RPYK+A TEAH+QRMALIRK+ KK
Sbjct: 136 IRPYKKACTTEAHKQRMALIRKTTKK 161
>BC011986-1|AAH11986.1| 161|Homo sapiens TAF12 protein protein.
Length = 161
Score = 175 bits (426), Expect = 2e-43
Identities = 83/146 (56%), Positives = 114/146 (78%), Gaps = 8/146 (5%)
Frame = +2
Query: 251 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELVREVDPTVQ 406
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+LVREVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 407 LDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGNDE 586
LDE+VEEMLLQ+ADDFI++ + +AC LA+HR + +E++DVQLHLERQWNMWIPGFG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 587 LRPYKRAAVTEAHRQRMALIRKSIKK 664
+RPYK+A TEAH+QRMALIRK+ KK
Sbjct: 136 IRPYKKACTTEAHKQRMALIRKTTKK 161
>AY206865-1|AAO13491.1| 161|Homo sapiens TAF12 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 20kD
protein.
Length = 161
Score = 175 bits (426), Expect = 2e-43
Identities = 83/146 (56%), Positives = 114/146 (78%), Gaps = 8/146 (5%)
Frame = +2
Query: 251 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELVREVDPTVQ 406
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+LVREVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 407 LDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGNDE 586
LDE+VEEMLLQ+ADDFI++ + +AC LA+HR + +E++DVQLHLERQWNMWIPGFG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 587 LRPYKRAAVTEAHRQRMALIRKSIKK 664
+RPYK+A TEAH+QRMALIRK+ KK
Sbjct: 136 IRPYKKACTTEAHKQRMALIRKTTKK 161
>AL513497-6|CAI22291.1| 161|Homo sapiens TAF12 RNA polymerase II,
TATA box binding proteineudogene protein.
Length = 161
Score = 175 bits (426), Expect = 2e-43
Identities = 83/146 (56%), Positives = 114/146 (78%), Gaps = 8/146 (5%)
Frame = +2
Query: 251 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELVREVDPTVQ 406
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+LVREVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 407 LDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGNDE 586
LDE+VEEMLLQ+ADDFI++ + +AC LA+HR + +E++DVQLHLERQWNMWIPGFG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 587 LRPYKRAAVTEAHRQRMALIRKSIKK 664
+RPYK+A TEAH+QRMALIRK+ KK
Sbjct: 136 IRPYKKACTTEAHKQRMALIRKTTKK 161
>U57693-2|AAC50601.1| 131|Homo sapiens TAF15 protein.
Length = 131
Score = 172 bits (418), Expect = 1e-42
Identities = 79/131 (60%), Positives = 106/131 (80%), Gaps = 5/131 (3%)
Frame = +2
Query: 287 MGTQSQVAKV-GQGGAGD----QSSQLLSRPRLQELVREVDPTVQLDEEVEEMLLQLADD 451
M + V K+ G GAG +++Q+L++ +LQ+LVREVDP QLDE+VEEMLLQ+ADD
Sbjct: 1 MANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADD 60
Query: 452 FIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGNDELRPYKRAAVTEAHRQ 631
FI++ + +AC LA+HR + +E++DVQLHLERQWNMWIPGFG++E+RPYK+A TEAH+Q
Sbjct: 61 FIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQ 120
Query: 632 RMALIRKSIKK 664
RMALIRK+ KK
Sbjct: 121 RMALIRKTTKK 131
>BC051824-1|AAH51824.1| 1122|Homo sapiens histone deacetylase 5
protein.
Length = 1122
Score = 34.7 bits (76), Expect = 0.39
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 2/143 (1%)
Frame = +2
Query: 242 LQNTSIQGSPS--QHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPTVQLDE 415
L TS+ P + P+ ++ + +G GG G S L LV VDPT++ +
Sbjct: 20 LPRTSLHSIPVTVEVKPVLPRAMPSSMGGGGGGSPSPVELRGA----LVGSVDPTLREQQ 75
Query: 416 EVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGNDELRP 595
+E+L + L A +H H +Q HL++Q M + E+
Sbjct: 76 LQQELLALKQQQQLQKQLLFAEFQKQHDHLTRQHEVQLQKHLKQQQEM-LAAKQQQEMLA 134
Query: 596 YKRAAVTEAHRQRMALIRKSIKK 664
KR E RQR ++ ++K
Sbjct: 135 AKRQQELEQQRQREQQRQEELEK 157
>AF132608-1|AAD29047.1| 1122|Homo sapiens histone deacetylase 5
protein.
Length = 1122
Score = 34.7 bits (76), Expect = 0.39
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 2/143 (1%)
Frame = +2
Query: 242 LQNTSIQGSPS--QHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPTVQLDE 415
L TS+ P + P+ ++ + +G GG G S L LV VDPT++ +
Sbjct: 20 LPRTSLHSIPVTVEVKPVLPRAMPSSMGGGGGGSPSPVELRGA----LVGSVDPTLREQQ 75
Query: 416 EVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGNDELRP 595
+E+L + L A +H H +Q HL++Q M + E+
Sbjct: 76 LQQELLALKQQQQLQKQLLFAEFQKQHDHLTRQHEVQLQKHLKQQQEM-LAAKQQQEMLA 134
Query: 596 YKRAAVTEAHRQRMALIRKSIKK 664
KR E RQR ++ ++K
Sbjct: 135 AKRQQELEQQRQREQQRQEELEK 157
>AB011172-1|BAA25526.2| 1080|Homo sapiens KIAA0600 protein protein.
Length = 1080
Score = 34.7 bits (76), Expect = 0.39
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 2/143 (1%)
Frame = +2
Query: 242 LQNTSIQGSPS--QHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPTVQLDE 415
L TS+ P + P+ ++ + +G GG G S L LV VDPT++ +
Sbjct: 63 LPRTSLHSIPVTVEVKPVLPRAMPSSMGGGGGGSPSPVELRGA----LVGSVDPTLREQQ 118
Query: 416 EVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGNDELRP 595
+E+L + L A +H H +Q HL++Q M + E+
Sbjct: 119 LQQELLALKQQQQLQKQLLFAEFQKQHDHLTRQHEVQLQKHLKQQQEM-LAAKQQQEMLA 177
Query: 596 YKRAAVTEAHRQRMALIRKSIKK 664
KR E RQR ++ ++K
Sbjct: 178 AKRQQELEQQRQREQQRQEELEK 200
>AY771619-1|AAX14814.1| 1446|Homo sapiens olfactorin long isoform
precursor protein.
Length = 1446
Score = 33.5 bits (73), Expect = 0.90
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +2
Query: 176 PTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQS 343
P+ G+ QG+++ + SP ++TS QGSPSQ +P + A QG S
Sbjct: 653 PSQGSPSQGSLRQESTSQASPSQRSTS-QGSPSQVNPSQGSTSHANSSQGSPSQGS 707
>AB051810-1|BAD23798.1| 1374|Homo sapiens Uromodulin-like protein
protein.
Length = 1374
Score = 33.5 bits (73), Expect = 0.90
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +2
Query: 176 PTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQS 343
P+ G+ QG+++ + SP ++TS QGSPSQ +P + A QG S
Sbjct: 581 PSQGSPSQGSLRQESTSQASPSQRSTS-QGSPSQVNPSQGSTSHANSSQGSPSQGS 635
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,673,319
Number of Sequences: 237096
Number of extensions: 1784219
Number of successful extensions: 5039
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5039
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9757565650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -