Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10b03
(568 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 267 2e-71
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 267 2e-71
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 267 2e-71
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 119 8e-27
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 54 4e-07
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 54 4e-07
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 54 4e-07
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 54 4e-07
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 54 4e-07
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 54 4e-07
AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3 prot... 32 1.2
AF007194-1|AAC02272.1| 957|Homo sapiens mucin protein. 32 1.2
AB038784-1|BAB12118.1| 877|Homo sapiens intestinal mucin protein. 32 1.2
AB038782-1|BAB12116.1| 878|Homo sapiens intestinal mucin protein. 32 1.2
AJ291390-1|CAC19572.1| 901|Homo sapiens MUC3B mucin protein. 32 1.6
AB038783-1|BAB12117.1| 878|Homo sapiens intestinal mucin protein. 32 1.6
AB038781-1|BAB12115.1| 878|Homo sapiens intestinal mucin protein. 32 1.6
AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein. 30 6.5
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 267 bits (654), Expect = 2e-71
Identities = 126/143 (88%), Positives = 134/143 (93%)
Frame = +2
Query: 41 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 220
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 221 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 400
QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 401 KVVKVANVSLLALYKEKKERPRS 469
KVVKVANVSLLALYK KKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 267 bits (654), Expect = 2e-71
Identities = 126/143 (88%), Positives = 134/143 (93%)
Frame = +2
Query: 41 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 220
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 221 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 400
QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 401 KVVKVANVSLLALYKEKKERPRS 469
KVVKVANVSLLALYK KKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 267 bits (654), Expect = 2e-71
Identities = 126/143 (88%), Positives = 134/143 (93%)
Frame = +2
Query: 41 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 220
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 221 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 400
QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 401 KVVKVANVSLLALYKEKKERPRS 469
KVVKVANVSLLALYK KKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 119 bits (286), Expect = 8e-27
Identities = 56/59 (94%), Positives = 56/59 (94%)
Frame = +2
Query: 290 FVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPR 466
FVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPR
Sbjct: 1 FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 54.0 bits (124), Expect = 4e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +2
Query: 149 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 328
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 329 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 412
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 54.0 bits (124), Expect = 4e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +2
Query: 149 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 328
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 329 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 412
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 54.0 bits (124), Expect = 4e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +2
Query: 149 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 328
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 329 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 412
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 54.0 bits (124), Expect = 4e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +2
Query: 149 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 328
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 329 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 412
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 54.0 bits (124), Expect = 4e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +2
Query: 149 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 328
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 329 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 412
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 54.0 bits (124), Expect = 4e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +2
Query: 149 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 328
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 329 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 412
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3
protein.
Length = 1217
Score = 32.3 bits (70), Expect = 1.2
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -2
Query: 408 TTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRM 235
+TL+ TP P TSTS F++ F + S TNA+ +F + S T T +
Sbjct: 531 STLQTTPST-----PSLQTSLTSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMS 585
Query: 234 AELGCLASTPTFSRTM 187
+ + TP FS T+
Sbjct: 586 SSPSSASITPVFSTTI 601
>AF007194-1|AAC02272.1| 957|Homo sapiens mucin protein.
Length = 957
Score = 32.3 bits (70), Expect = 1.2
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -2
Query: 408 TTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRM 235
+TL+ TP P TSTS F++ F + S TNA+ +F + S T T +
Sbjct: 531 STLQTTPST-----PSLQTSLTSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMS 585
Query: 234 AELGCLASTPTFSRTM 187
+ + TP FS T+
Sbjct: 586 SSPSSASITPVFSTTI 601
>AB038784-1|BAB12118.1| 877|Homo sapiens intestinal mucin protein.
Length = 877
Score = 32.3 bits (70), Expect = 1.2
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -2
Query: 408 TTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRM 235
+TL+ TP P TSTS F++ F + S TNA+ +F + S T T +
Sbjct: 191 STLQTTPST-----PSLQTSLTSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMS 245
Query: 234 AELGCLASTPTFSRTM 187
+ + TP FS T+
Sbjct: 246 SSPSSASITPVFSTTI 261
>AB038782-1|BAB12116.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 32.3 bits (70), Expect = 1.2
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -2
Query: 408 TTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRM 235
+TL+ TP P TSTS F++ F + S TNA+ +F + S T T +
Sbjct: 191 STLQTTPST-----PSLQTSLTSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMS 245
Query: 234 AELGCLASTPTFSRTM 187
+ + TP FS T+
Sbjct: 246 SSPSSASITPVFSTTI 261
>AJ291390-1|CAC19572.1| 901|Homo sapiens MUC3B mucin protein.
Length = 901
Score = 31.9 bits (69), Expect = 1.6
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = -2
Query: 408 TTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRM 235
+TL+ TP + P TSTS F++ F + S TNA+ +F + S T T +
Sbjct: 215 STLQTTPSI-----PSLQTSLTSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMS 269
Query: 234 AELGCLASTPTFSRTM 187
+ + TP F+ T+
Sbjct: 270 SSPSSASITPVFATTI 285
>AB038783-1|BAB12117.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 31.9 bits (69), Expect = 1.6
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = -2
Query: 408 TTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRM 235
+TL+ TP + P TSTS F++ F + S TNA+ +F + S T T +
Sbjct: 192 STLQTTPSI-----PSLQTSLTSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMS 246
Query: 234 AELGCLASTPTFSRTM 187
+ + TP F+ T+
Sbjct: 247 SSPSSASITPVFATTI 262
>AB038781-1|BAB12115.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 31.9 bits (69), Expect = 1.6
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = -2
Query: 408 TTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRM 235
+TL+ TP + P TSTS F++ F + S TNA+ +F + S T T +
Sbjct: 192 STLQTTPSI-----PSLQTSLTSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMS 246
Query: 234 AELGCLASTPTFSRTM 187
+ + TP F+ T+
Sbjct: 247 SSPSSASITPVFATTI 262
>AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.
Length = 1332
Score = 29.9 bits (64), Expect = 6.5
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +1
Query: 127 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AAQLCHPQMRPC 255
SPHG +M G P RP ES+C PQ RPC
Sbjct: 37 SPHGPDMSG-PLEGADGGGDPRPGESFCPGGVPSPGPPQHRPC 78
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,950,120
Number of Sequences: 237096
Number of extensions: 2096911
Number of successful extensions: 4529
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4529
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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