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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b03
         (676 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC130559-1|AAI30560.1|   99|Homo sapiens similar to CG14977-PA p...    74   5e-13
BC130553-1|AAI30554.1|   99|Homo sapiens similar to CG14977-PA p...    74   5e-13
BC105609-1|AAI05610.1|   99|Homo sapiens similar to CG14977-PA p...    74   5e-13
BC063401-1|AAH63401.1|   99|Homo sapiens similar to CG14977-PA p...    74   5e-13
BC043595-1|AAH43595.1|  541|Homo sapiens RFT1 homolog (S. cerevi...    71   5e-12
AJ318099-1|CAC69544.1|  541|Homo sapiens putative endoplasmic re...    71   5e-12
BC028382-1|AAH28382.1|  570|Homo sapiens vacuolar protein sortin...    30   8.6  
BC012932-1|AAH12932.1|  570|Homo sapiens vacuolar protein sortin...    30   8.6  
AY453586-1|AAS49034.1|  390|Homo sapiens vacuolar protein sortin...    30   8.6  
AL358073-5|CAI14266.1|  316|Homo sapiens vacuolar protein sortin...    30   8.6  
AL358073-4|CAI14265.1|  570|Homo sapiens vacuolar protein sortin...    30   8.6  
AK223214-1|BAD96934.1|  570|Homo sapiens vacuolar protein sortin...    30   8.6  
AK023170-1|BAB14443.1|  570|Homo sapiens protein ( Homo sapiens ...    30   8.6  
AF165513-1|AAF86643.1|  570|Homo sapiens vacuolar protein sortin...    30   8.6  

>BC130559-1|AAI30560.1|   99|Homo sapiens similar to CG14977-PA
           protein.
          Length = 99

 Score = 73.7 bits (173), Expect = 5e-13
 Identities = 35/83 (42%), Positives = 61/83 (73%)
 Frame = +2

Query: 101 MDKIPDQIGYLVLTEDGAVLESGGELENDERIATIITDLITLSNEVDSVAFGPSENFKKI 280
           +++IPDQ+GYLVL+E GAVL S G+LENDE+ A+ I++L++ +     +  G +  FK++
Sbjct: 9   LERIPDQLGYLVLSE-GAVLASSGDLENDEQAASAISELVSTACGF-RLHRGMNVPFKRL 66

Query: 281 SITFDDHWYIICLSNKKIYVVKR 349
           S+ F +H  ++ +S ++++VVKR
Sbjct: 67  SVVFGEHTLLVTVSGQRVFVVKR 89


>BC130553-1|AAI30554.1|   99|Homo sapiens similar to CG14977-PA
           protein.
          Length = 99

 Score = 73.7 bits (173), Expect = 5e-13
 Identities = 35/83 (42%), Positives = 61/83 (73%)
 Frame = +2

Query: 101 MDKIPDQIGYLVLTEDGAVLESGGELENDERIATIITDLITLSNEVDSVAFGPSENFKKI 280
           +++IPDQ+GYLVL+E GAVL S G+LENDE+ A+ I++L++ +     +  G +  FK++
Sbjct: 9   LERIPDQLGYLVLSE-GAVLASSGDLENDEQAASAISELVSTACGF-RLHRGMNVPFKRL 66

Query: 281 SITFDDHWYIICLSNKKIYVVKR 349
           S+ F +H  ++ +S ++++VVKR
Sbjct: 67  SVVFGEHTLLVTVSGQRVFVVKR 89


>BC105609-1|AAI05610.1|   99|Homo sapiens similar to CG14977-PA
           protein.
          Length = 99

 Score = 73.7 bits (173), Expect = 5e-13
 Identities = 35/83 (42%), Positives = 61/83 (73%)
 Frame = +2

Query: 101 MDKIPDQIGYLVLTEDGAVLESGGELENDERIATIITDLITLSNEVDSVAFGPSENFKKI 280
           +++IPDQ+GYLVL+E GAVL S G+LENDE+ A+ I++L++ +     +  G +  FK++
Sbjct: 9   LERIPDQLGYLVLSE-GAVLASSGDLENDEQAASAISELVSTACGF-RLHRGMNVPFKRL 66

Query: 281 SITFDDHWYIICLSNKKIYVVKR 349
           S+ F +H  ++ +S ++++VVKR
Sbjct: 67  SVVFGEHTLLVTVSGQRVFVVKR 89


>BC063401-1|AAH63401.1|   99|Homo sapiens similar to CG14977-PA
           protein.
          Length = 99

 Score = 73.7 bits (173), Expect = 5e-13
 Identities = 35/83 (42%), Positives = 61/83 (73%)
 Frame = +2

Query: 101 MDKIPDQIGYLVLTEDGAVLESGGELENDERIATIITDLITLSNEVDSVAFGPSENFKKI 280
           +++IPDQ+GYLVL+E GAVL S G+LENDE+ A+ I++L++ +     +  G +  FK++
Sbjct: 9   LERIPDQLGYLVLSE-GAVLASSGDLENDEQAASAISELVSTACGF-RLHRGMNVPFKRL 66

Query: 281 SITFDDHWYIICLSNKKIYVVKR 349
           S+ F +H  ++ +S ++++VVKR
Sbjct: 67  SVVFGEHTLLVTVSGQRVFVVKR 89


>BC043595-1|AAH43595.1|  541|Homo sapiens RFT1 homolog (S.
           cerevisiae) protein.
          Length = 541

 Score = 70.5 bits (165), Expect = 5e-12
 Identities = 32/87 (36%), Positives = 52/87 (59%)
 Frame = +1

Query: 415 ARNILMSSLENASFNILIQILFRCITFIINAWVIRNVGHEILGIMNVRXXXXXXXXXXXS 594
           ++ +L  +   AS  +L+Q+LFR ITF++NA+++R +  EI+G++NVR           +
Sbjct: 3   SQEVLGHAARLASSGLLLQVLFRLITFVLNAFILRFLSKEIVGVVNVRLTLLYSTTLFLA 62

Query: 595 REPFNRACLGRTDGFGWSHLINQIWLS 675
           RE F RACL       WS  +N +WL+
Sbjct: 63  REAFRRACLSGGTQRDWSQTLNLLWLT 89


>AJ318099-1|CAC69544.1|  541|Homo sapiens putative endoplasmic
           reticulum multispan transmembrane protein protein.
          Length = 541

 Score = 70.5 bits (165), Expect = 5e-12
 Identities = 32/87 (36%), Positives = 52/87 (59%)
 Frame = +1

Query: 415 ARNILMSSLENASFNILIQILFRCITFIINAWVIRNVGHEILGIMNVRXXXXXXXXXXXS 594
           ++ +L  +   AS  +L+Q+LFR ITF++NA+++R +  EI+G++NVR           +
Sbjct: 3   SQEVLGHAARLASSGLLLQVLFRLITFVLNAFILRFLSKEIVGVVNVRLTLLYSTTLFLA 62

Query: 595 REPFNRACLGRTDGFGWSHLINQIWLS 675
           RE F RACL       WS  +N +WL+
Sbjct: 63  REAFRRACLSGGTQRDWSQTLNLLWLT 89


>BC028382-1|AAH28382.1|  570|Homo sapiens vacuolar protein sorting
           45 homolog (S. cerevisiae) protein.
          Length = 570

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +1

Query: 463 LIQILFRC---ITFIINAWVIRNVGHEILGIMNVR 558
           L+ IL RC   IT ++N W  + + HE+LGI N R
Sbjct: 212 LLLILDRCDDAITPLLNQWTYQAMVHELLGINNNR 246


>BC012932-1|AAH12932.1|  570|Homo sapiens vacuolar protein sorting
           45 homolog (S. cerevisiae) protein.
          Length = 570

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +1

Query: 463 LIQILFRC---ITFIINAWVIRNVGHEILGIMNVR 558
           L+ IL RC   IT ++N W  + + HE+LGI N R
Sbjct: 212 LLLILDRCDDAITPLLNQWTYQAMVHELLGINNNR 246


>AY453586-1|AAS49034.1|  390|Homo sapiens vacuolar protein sorting
           45A isoform protein.
          Length = 390

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +1

Query: 463 LIQILFRC---ITFIINAWVIRNVGHEILGIMNVR 558
           L+ IL RC   IT ++N W  + + HE+LGI N R
Sbjct: 32  LLLILDRCDDAITPLLNQWTYQAMVHELLGINNNR 66


>AL358073-5|CAI14266.1|  316|Homo sapiens vacuolar protein sorting
           45 homolog (S. cerevisiae) protein.
          Length = 316

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +1

Query: 463 LIQILFRC---ITFIINAWVIRNVGHEILGIMNVR 558
           L+ IL RC   IT ++N W  + + HE+LGI N R
Sbjct: 143 LLLILDRCDDAITPLLNQWTYQAMVHELLGINNNR 177


>AL358073-4|CAI14265.1|  570|Homo sapiens vacuolar protein sorting
           45 homolog (S. cerevisiae) protein.
          Length = 570

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +1

Query: 463 LIQILFRC---ITFIINAWVIRNVGHEILGIMNVR 558
           L+ IL RC   IT ++N W  + + HE+LGI N R
Sbjct: 212 LLLILDRCDDAITPLLNQWTYQAMVHELLGINNNR 246


>AK223214-1|BAD96934.1|  570|Homo sapiens vacuolar protein sorting
           45A variant protein.
          Length = 570

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +1

Query: 463 LIQILFRC---ITFIINAWVIRNVGHEILGIMNVR 558
           L+ IL RC   IT ++N W  + + HE+LGI N R
Sbjct: 212 LLLILDRCDDAITPLLNQWTYQAMVHELLGINNNR 246


>AK023170-1|BAB14443.1|  570|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13108 fis, clone NT2RP3002529, weakly similar to
           VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS45. ).
          Length = 570

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +1

Query: 463 LIQILFRC---ITFIINAWVIRNVGHEILGIMNVR 558
           L+ IL RC   IT ++N W  + + HE+LGI N R
Sbjct: 212 LLLILDRCDDAITPLLNQWTYQAMVHELLGINNNR 246


>AF165513-1|AAF86643.1|  570|Homo sapiens vacuolar protein sorting
           45 isoform protein.
          Length = 570

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +1

Query: 463 LIQILFRC---ITFIINAWVIRNVGHEILGIMNVR 558
           L+ IL RC   IT ++N W  + + HE+LGI N R
Sbjct: 212 LLLILDRCDDAITPLLNQWTYQAMVHELLGINNNR 246


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,302,310
Number of Sequences: 237096
Number of extensions: 1591383
Number of successful extensions: 2198
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2190
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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