Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0024
         (626 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D87453-1|BAA13394.1|  415|Homo sapiens KIAA0264 protein.               56   1e-07
BC064902-1|AAH64902.1|  414|Homo sapiens mitochondrial ribosomal...    56   1e-07
BC013101-1|AAH13101.1|  428|Homo sapiens leucine rich repeat con...    31   3.3  
AK075201-1|BAC11466.1|  428|Homo sapiens  2.4.1.143).  protein.        31   3.3  
AK074521-1|BAC11038.1|  449|Homo sapiens protein ( Homo sapiens ...    31   3.3  

>D87453-1|BAA13394.1|  415|Homo sapiens KIAA0264 protein.
          Length = 415

 Score = 55.6 bits (128), Expect = 1e-07
 Identities = 24/82 (29%), Positives = 46/82 (56%)
 Frame = +2

Query: 11  LHKLRLSAETGSMLESTSHATVRHSIKFDYVDELIQMLKDPLNYGLFLDDYSANILLNEL 190
           L+K R S     +   T H  +R  +K+D  D+ +  L + + YG+F D+++ N+L++  
Sbjct: 93  LYKFRHSPNCWYLRNWTIHTWIRQCLKYDAQDKALYTLVNKVQYGIFPDNFTFNLLMDSF 152

Query: 191 LVKKNYTQAADIAALIMLQEEY 256
           + K+NY  A  +   +M+QE +
Sbjct: 153 IKKENYKDALSVVFEVMMQEAF 174


>BC064902-1|AAH64902.1|  414|Homo sapiens mitochondrial ribosomal
           protein S27 protein.
          Length = 414

 Score = 55.6 bits (128), Expect = 1e-07
 Identities = 24/82 (29%), Positives = 46/82 (56%)
 Frame = +2

Query: 11  LHKLRLSAETGSMLESTSHATVRHSIKFDYVDELIQMLKDPLNYGLFLDDYSANILLNEL 190
           L+K R S     +   T H  +R  +K+D  D+ +  L + + YG+F D+++ N+L++  
Sbjct: 92  LYKFRHSPNCWYLRNWTIHTWIRQCLKYDAQDKALYTLVNKVQYGIFPDNFTFNLLMDSF 151

Query: 191 LVKKNYTQAADIAALIMLQEEY 256
           + K+NY  A  +   +M+QE +
Sbjct: 152 IKKENYKDALSVVFEVMMQEAF 173


>BC013101-1|AAH13101.1|  428|Homo sapiens leucine rich repeat
           containing 42 protein.
          Length = 428

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
 Frame = +2

Query: 59  TSHATVRHSIK--FDYVDELIQMLKDPLNYGLFLDDYSANILLNELLVKKNYTQ-AADIA 229
           T    +R+S K  F  V   I    D ++  +   +  A  L +    ++ +T+  A + 
Sbjct: 77  TREGNLRYSAKSLFSLVLGFISDNVDHIDSLIGFPEQIAEKLFSAAEARQKFTEPGAGLR 136

Query: 230 ALIMLQEEYNNDILCSLCQYSSYMFIKNYVE 322
           AL    E Y + +LCSLC  + Y+ I   +E
Sbjct: 137 ALQKFTEAYGSLVLCSLCLRNRYLVISEKLE 167


>AK075201-1|BAC11466.1|  428|Homo sapiens  2.4.1.143).  protein.
          Length = 428

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
 Frame = +2

Query: 59  TSHATVRHSIK--FDYVDELIQMLKDPLNYGLFLDDYSANILLNELLVKKNYTQ-AADIA 229
           T    +R+S K  F  V   I    D ++  +   +  A  L +    ++ +T+  A + 
Sbjct: 77  TREGNLRYSAKSLFSLVLGFISDNVDHIDSLIGFPEQIAEKLFSAAEARQKFTEPGAGLR 136

Query: 230 ALIMLQEEYNNDILCSLCQYSSYMFIKNYVE 322
           AL    E Y + +LCSLC  + Y+ I   +E
Sbjct: 137 ALQKFTEAYGSLVLCSLCLRNRYLVISEKLE 167


>AK074521-1|BAC11038.1|  449|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90040 fis, clone HEMBA1002164. ).
          Length = 449

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
 Frame = +2

Query: 59  TSHATVRHSIK--FDYVDELIQMLKDPLNYGLFLDDYSANILLNELLVKKNYTQ-AADIA 229
           T    +R+S K  F  V   I    D ++  +   +  A  L +    ++ +T+  A + 
Sbjct: 77  TREGNLRYSAKSLFSLVLGFISDNVDHIDSLIGFPEQIAEKLFSAAEARQKFTEPGAGLR 136

Query: 230 ALIMLQEEYNNDILCSLCQYSSYMFIKNYVE 322
           AL    E Y + +LCSLC  + Y+ I   +E
Sbjct: 137 ALQKFTEAYGSLVLCSLCLRNRYLVISEKLE 167


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,750,516
Number of Sequences: 237096
Number of extensions: 1185195
Number of successful extensions: 1876
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1876
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6804036910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)