Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0035
         (518 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC004213-1|AAH04213.1|  223|Homo sapiens proteasome (prosome, ma...    30   5.6  
BC004184-1|AAH04184.1|  223|Homo sapiens proteasome (prosome, ma...    30   5.6  
BC002383-1|AAH02383.1|  223|Homo sapiens proteasome (prosome, ma...    30   5.6  

>BC004213-1|AAH04213.1|  223|Homo sapiens proteasome (prosome,
           macropain) 26S subunit, non-ATPase, 9 protein.
          Length = 223

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 17/30 (56%), Positives = 17/30 (56%)
 Frame = +3

Query: 9   TVIVRRENADLTFELVPKPWAKPGLLGCQI 98
           TVI R E   L   LVP  WA  GLLGC I
Sbjct: 191 TVIRRGEKHQL--RLVPTRWAGKGLLGCNI 218


>BC004184-1|AAH04184.1|  223|Homo sapiens proteasome (prosome,
           macropain) 26S subunit, non-ATPase, 9 protein.
          Length = 223

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 17/30 (56%), Positives = 17/30 (56%)
 Frame = +3

Query: 9   TVIVRRENADLTFELVPKPWAKPGLLGCQI 98
           TVI R E   L   LVP  WA  GLLGC I
Sbjct: 191 TVIRRGEKHQL--RLVPTRWAGKGLLGCNI 218


>BC002383-1|AAH02383.1|  223|Homo sapiens proteasome (prosome,
           macropain) 26S subunit, non-ATPase, 9 protein.
          Length = 223

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 17/30 (56%), Positives = 17/30 (56%)
 Frame = +3

Query: 9   TVIVRRENADLTFELVPKPWAKPGLLGCQI 98
           TVI R E   L   LVP  WA  GLLGC I
Sbjct: 191 TVIRRGEKHQL--RLVPTRWAGKGLLGCNI 218


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,186,757
Number of Sequences: 237096
Number of extensions: 1554205
Number of successful extensions: 2193
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2193
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4933413474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)